Wall clock time and date at job start Mon Mar 30 2020 02:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47455 * 2 1 4 4 C 1.53008 * 109.46764 * 240.00608 * 2 1 3 5 5 C 1.50700 * 109.47045 * 174.99907 * 4 2 1 6 6 H 1.08003 * 120.00067 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00061 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99927 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99997 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47237 * 59.99601 * 9 7 5 11 11 H 1.48499 * 109.47006 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47190 * 299.99754 * 9 7 5 13 13 N 1.46897 * 109.47199 * 120.00837 * 2 1 3 14 14 C 1.46897 * 110.99772 * 274.99422 * 13 2 1 15 15 C 1.50706 * 109.46900 * 179.97438 * 14 13 2 16 16 C 1.37810 * 122.61718 * 90.00317 * 15 14 13 17 17 N 1.30082 * 116.88133 * 179.97438 * 16 15 14 18 18 S 1.69600 * 107.14985 * 359.97438 * 17 16 15 19 19 C 1.35137 * 122.62053 * 269.71172 * 15 14 13 20 20 H 1.08991 * 109.47291 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46908 * 299.99610 * 1 2 3 22 22 H 1.09005 * 109.46999 * 59.99271 * 1 2 3 23 23 H 1.08997 * 109.47101 * 294.99944 * 4 2 1 24 24 H 1.09007 * 109.47246 * 55.00359 * 4 2 1 25 25 H 0.97000 * 120.00253 * 180.02562 * 8 7 5 26 26 H 1.00899 * 110.99868 * 151.04462 * 13 2 1 27 27 H 1.09000 * 109.46743 * 60.00757 * 14 13 2 28 28 H 1.09000 * 109.47313 * 299.99940 * 14 13 2 29 29 H 1.07997 * 121.56008 * 0.02562 * 16 15 14 30 30 H 1.07992 * 127.25138 * 0.02688 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5418 -0.6148 -1.3129 6 1 4.0789 -0.0855 -0.5398 7 6 4.2302 -1.1925 -2.3587 8 7 3.5761 -1.8358 -3.3009 9 14 6.0919 -1.0613 -2.4370 10 1 6.6837 -1.6884 -1.2280 11 1 6.5867 -1.7600 -3.6504 12 1 6.4853 0.3695 -2.4954 13 7 2.0197 -0.6927 1.1993 14 6 2.0826 0.2223 2.3468 15 6 2.5875 -0.5223 3.5559 16 6 3.9267 -0.6094 3.8689 17 7 4.2382 -1.2798 4.9393 18 16 2.7889 -1.8455 5.6144 19 6 1.7619 -1.1519 4.4209 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 1.7515 -1.7714 -1.2058 24 1 1.6053 -0.2615 -2.1371 25 1 4.0604 -2.2425 -4.0364 26 1 2.9173 -1.1206 1.0285 27 1 1.0872 0.6159 2.5525 28 1 2.7590 1.0459 2.1182 29 1 4.6823 -0.1421 3.2548 30 1 0.6846 -1.2089 4.3725 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687222917.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:48 Heat of formation + Delta-G solvation = 6.796679 kcal Electronic energy + Delta-G solvation = -13225.706840 eV Core-core repulsion = 10953.237704 eV Total energy + Delta-G solvation = -2272.469137 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.13361 -37.94859 -34.89660 -33.31808 -30.93104 -29.25496 -26.86666 -25.19848 -24.20707 -21.11224 -20.59289 -18.71222 -18.46373 -17.05982 -16.41714 -16.35493 -15.72681 -14.95282 -14.74422 -14.40345 -13.95702 -13.54861 -13.47560 -13.21328 -13.12037 -12.59384 -12.54661 -12.41031 -12.21046 -11.95512 -11.39627 -11.19720 -11.00772 -10.60245 -10.55178 -9.58219 -9.13375 -8.18248 -6.28312 -0.20027 0.63824 0.92441 1.40600 1.41990 1.48225 1.49312 2.40724 3.14366 3.59626 3.86297 4.05837 4.20243 4.36277 4.57602 4.61741 4.74060 4.77270 4.99097 5.04473 5.08552 5.26113 5.38695 5.52151 5.56901 5.64413 5.86604 6.22119 6.42752 6.62820 6.87540 7.40505 8.93194 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.026717 B = 0.007108 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.787452 B = 3938.028940 C = 4731.346867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.096 3.904 3 H 0.031 0.969 4 C 0.026 3.974 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.682 5.682 14 C 0.128 3.872 15 C -0.173 4.173 16 C 0.094 3.906 17 N -0.498 5.498 18 S 0.255 5.745 19 C -0.170 4.170 20 H 0.047 0.953 21 H 0.067 0.933 22 H 0.051 0.949 23 H -0.005 1.005 24 H -0.005 1.005 25 H 0.262 0.738 26 H 0.342 0.658 27 H 0.094 0.906 28 H 0.039 0.961 29 H 0.188 0.812 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.097 3.586 15.295 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.014 4.014 3 H 0.049 0.951 4 C -0.012 4.012 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.315 5.315 14 C -0.004 4.004 15 C -0.190 4.190 16 C -0.104 4.104 17 N -0.318 5.318 18 S 0.407 5.593 19 C -0.319 4.319 20 H 0.066 0.934 21 H 0.086 0.914 22 H 0.070 0.930 23 H 0.014 0.986 24 H 0.014 0.986 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.205 0.795 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.821 2.177 17.065 17.623 hybrid contribution 1.200 1.257 -2.401 2.964 sum -2.621 3.435 14.664 15.287 Atomic orbital electron populations 1.21715 0.94327 1.01404 1.01147 1.21442 0.95216 0.95010 0.89711 0.95093 1.19154 0.94783 0.94718 0.92505 1.21525 0.93337 1.33992 1.08245 0.92134 1.25870 1.03110 0.94934 0.95459 1.70083 1.37546 1.36792 1.12701 0.85632 0.80092 0.78521 0.77600 1.19262 1.21297 1.19326 1.60675 1.34024 1.32495 1.04256 1.20518 1.01061 0.92204 0.86568 1.20197 0.92136 1.05971 1.00698 1.23039 0.96962 0.96427 0.94012 1.76727 1.20789 1.19372 1.14888 1.83796 0.94116 1.51768 1.29622 1.26760 1.06637 1.00021 0.98481 0.93376 0.91448 0.93042 0.98648 0.98637 0.92914 0.83921 0.88821 0.94287 0.79517 0.77487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.41 71.98 0.68 -3.47 16 2 C 0.10 3.71 2.59 44.92 0.12 3.83 16 3 H 0.03 1.20 7.80 -2.39 -0.02 1.18 16 4 C 0.03 1.31 4.57 29.85 0.14 1.44 16 5 C -0.53 -28.76 8.12 25.60 0.21 -28.55 16 6 H 0.06 3.08 7.49 -2.91 -0.02 3.06 16 7 C 0.00 0.25 5.46 84.66 0.46 0.71 16 8 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 9 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.68 -23.97 6.30 -495.57 -3.12 -27.09 16 14 C 0.13 3.46 5.74 85.56 0.49 3.95 16 15 C -0.17 -4.40 5.34 -20.68 -0.11 -4.51 16 16 C 0.09 2.53 11.07 84.85 0.94 3.47 16 17 N -0.50 -14.22 12.09 -62.61 -0.76 -14.98 16 18 S 0.26 5.75 23.72 -56.49 -1.34 4.41 16 19 C -0.17 -3.66 11.19 67.11 0.75 -2.91 16 20 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.07 1.77 7.45 -2.39 -0.02 1.75 16 22 H 0.05 1.62 8.14 -2.38 -0.02 1.61 16 23 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 24 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 25 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 26 H 0.34 13.66 7.20 -89.69 -0.65 13.02 16 27 H 0.09 2.19 7.42 -2.39 -0.02 2.17 16 28 H 0.04 1.05 8.04 -2.39 -0.02 1.03 16 29 H 0.19 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.21 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -62.53 272.15 1.25 -61.28 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.48 Total: 12.53 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 3.67 Total: -26.04 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -3.59 Total: -97.70 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.34 Total: 4.41 kcal Total: -62.53 1.25 -61.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687222917.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.079 kcal (2) G-P(sol) polarization free energy of solvation -62.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds