Wall clock time and date at job start Mon Mar 30 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47286 * 2 1 4 4 C 1.53005 * 109.46651 * 120.00188 * 2 1 3 5 5 C 1.50703 * 109.46680 * 184.99701 * 4 2 1 6 6 H 1.08000 * 120.00014 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99904 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99798 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46819 * 90.00249 * 9 7 5 11 11 H 1.48492 * 109.47317 * 210.00366 * 9 7 5 12 12 H 1.48496 * 109.47055 * 330.00502 * 9 7 5 13 13 N 1.46902 * 109.46973 * 239.99637 * 2 1 3 14 14 C 1.46899 * 110.99878 * 85.00255 * 13 2 1 15 15 C 1.50698 * 109.47216 * 179.97438 * 14 13 2 16 16 C 1.37817 * 122.61794 * 90.00423 * 15 14 13 17 17 N 1.30078 * 116.88020 * 180.29792 * 16 15 14 18 18 S 1.69601 * 107.15275 * 359.60216 * 17 16 15 19 19 C 1.35143 * 122.62389 * 270.02822 * 15 14 13 20 20 H 1.08995 * 109.47286 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47096 * 300.00504 * 1 2 3 22 22 H 1.09005 * 109.46557 * 59.99972 * 1 2 3 23 23 H 1.08994 * 109.47108 * 304.99556 * 4 2 1 24 24 H 1.08997 * 109.47121 * 65.00105 * 4 2 1 25 25 H 0.97000 * 120.00119 * 179.97438 * 8 7 5 26 26 H 1.00900 * 111.00119 * 208.95685 * 13 2 1 27 27 H 1.08999 * 109.46820 * 60.00034 * 14 13 2 28 28 H 1.08998 * 109.47380 * 300.00285 * 14 13 2 29 29 H 1.08002 * 121.55569 * 0.02562 * 16 15 14 30 30 H 1.07997 * 127.24387 * 359.97423 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6151 1.3127 6 1 4.0789 -0.0856 0.5396 7 6 4.2303 -1.1928 2.3584 8 7 3.5762 -1.8371 3.3000 9 14 6.0920 -1.0618 2.4367 10 1 6.4709 0.1610 3.1894 11 1 6.6439 -2.2568 3.1239 12 1 6.6412 -0.9851 1.0592 13 7 2.0197 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5885 -0.5217 -3.5557 16 6 1.7478 -1.1691 -4.4351 17 7 2.3050 -1.7818 -5.4383 18 16 3.9785 -1.5414 -5.3042 19 6 3.9021 -0.6067 -3.8618 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8901 23 1 1.6054 -0.2618 2.1370 24 1 1.7516 -1.7716 1.2056 25 1 4.0605 -2.2439 4.0355 26 1 2.9173 -1.1206 -1.0287 27 1 2.7589 1.0460 -2.1182 28 1 1.0872 0.6163 -2.5525 29 1 0.6769 -1.1715 -4.2954 30 1 4.7295 -0.1780 -3.3159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687222919.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:51 Heat of formation + Delta-G solvation = 25.594613 kcal Electronic energy + Delta-G solvation = -13219.723467 eV Core-core repulsion = 10948.069470 eV Total energy + Delta-G solvation = -2271.653997 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.04864 -36.44585 -33.05268 -31.89995 -29.52534 -27.43438 -25.80681 -23.55336 -22.64608 -19.65696 -19.40528 -17.75439 -16.39497 -15.60902 -14.97224 -14.73467 -14.34923 -13.67580 -13.40627 -13.20403 -12.60497 -12.17309 -11.85893 -11.60789 -11.27388 -11.23116 -11.02075 -10.73209 -10.58337 -10.32003 -10.25093 -9.61307 -9.29422 -9.11746 -8.53708 -8.42530 -7.72531 -6.06730 -4.10250 0.80315 1.62064 1.94754 2.55710 3.26015 3.33296 3.34265 4.38969 4.83907 4.94489 5.06102 5.29833 5.38843 5.60377 5.78434 5.89545 6.04576 6.08452 6.17546 6.26244 6.48755 6.69442 6.89334 6.89904 7.45976 7.58844 7.92142 7.98938 8.19223 8.32203 8.95742 9.54057 11.04157 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.007278 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.878637 B = 3846.252279 C = 4703.960578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.031 0.969 4 C 0.020 3.980 5 C -0.525 4.525 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.122 3.878 15 C -0.152 4.152 16 C 0.111 3.889 17 N -0.466 5.466 18 S 0.230 5.770 19 C -0.196 4.196 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.037 0.963 23 H 0.022 0.978 24 H 0.026 0.974 25 H 0.261 0.739 26 H 0.356 0.644 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.184 0.816 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 3.649 -13.048 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.049 0.951 4 C -0.017 4.017 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.313 5.313 14 C -0.010 4.010 15 C -0.170 4.170 16 C -0.088 4.088 17 N -0.285 5.285 18 S 0.382 5.618 19 C -0.345 4.345 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.177 0.823 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.201 0.799 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.207 2.152 -14.866 15.069 hybrid contribution 1.207 1.489 2.006 2.775 sum 0.000 3.640 -12.860 13.365 Atomic orbital electron populations 1.21802 0.96599 1.01417 0.99558 1.21643 0.93444 0.95916 0.91207 0.95141 1.19286 0.95413 0.96256 0.90788 1.21152 0.92223 1.34626 1.08351 0.93084 1.24989 0.98232 0.95149 0.95713 1.69955 1.35547 1.35450 1.11905 0.86641 0.85901 0.77586 0.78131 1.20725 1.21156 1.19965 1.60631 1.34992 1.31686 1.03994 1.20512 0.99877 0.92834 0.87767 1.20289 0.91849 1.04294 1.00530 1.22772 1.02691 0.93445 0.89913 1.76808 1.01791 1.24851 1.25085 1.83918 1.10045 1.46851 1.20996 1.26497 1.00879 1.04526 1.02645 0.92581 0.93251 0.94430 0.95950 0.95551 0.92892 0.82294 0.94574 0.90560 0.79938 0.80057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.41 37.16 0.35 -1.97 16 2 C 0.09 1.72 2.59 -67.71 -0.18 1.55 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.21 16 4 C 0.02 0.49 4.57 -27.88 -0.13 0.37 16 5 C -0.53 -14.06 8.12 -34.44 -0.28 -14.34 16 6 H 0.05 1.32 7.49 -52.49 -0.39 0.92 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.68 -12.37 6.30 -107.99 -0.68 -13.05 16 14 C 0.12 1.80 5.74 -4.98 -0.03 1.77 16 15 C -0.15 -2.10 5.34 -105.88 -0.57 -2.67 16 16 C 0.11 1.49 11.07 -18.45 -0.20 1.28 16 17 N -0.47 -6.72 12.09 28.86 0.35 -6.38 16 18 S 0.23 2.91 23.72 -107.50 -2.55 0.36 16 19 C -0.20 -2.55 11.19 29.63 0.33 -2.22 16 20 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 23 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.36 7.21 7.20 -39.29 -0.28 6.93 16 27 H 0.04 0.53 8.04 -51.93 -0.42 0.12 16 28 H 0.08 1.01 7.42 -51.93 -0.39 0.63 16 29 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 272.15 15.07 4.10 4.10 Total: -1.00 -29.04 272.15 -7.80 -36.84 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.94 Total: 2.13 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.80 Total: -14.63 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.41 Total: -44.81 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.55 Total: 0.36 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.04 -7.80 -36.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687222919.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.434 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds