Wall clock time and date at job start Mon Mar 30 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47286 * 2 1 4 4 C 1.53005 * 109.46651 * 120.00188 * 2 1 3 5 5 C 1.50703 * 109.46680 * 184.99701 * 4 2 1 6 6 H 1.08000 * 120.00014 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99904 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99798 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46819 * 90.00249 * 9 7 5 11 11 H 1.48492 * 109.47317 * 210.00366 * 9 7 5 12 12 H 1.48496 * 109.47055 * 330.00502 * 9 7 5 13 13 N 1.46902 * 109.46973 * 239.99637 * 2 1 3 14 14 C 1.46899 * 110.99878 * 85.00255 * 13 2 1 15 15 C 1.50698 * 109.47216 * 179.97438 * 14 13 2 16 16 C 1.37817 * 122.61794 * 90.00423 * 15 14 13 17 17 N 1.30078 * 116.88020 * 180.29792 * 16 15 14 18 18 S 1.69601 * 107.15275 * 359.60216 * 17 16 15 19 19 C 1.35143 * 122.62389 * 270.02822 * 15 14 13 20 20 H 1.08995 * 109.47286 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47096 * 300.00504 * 1 2 3 22 22 H 1.09005 * 109.46557 * 59.99972 * 1 2 3 23 23 H 1.08994 * 109.47108 * 304.99556 * 4 2 1 24 24 H 1.08997 * 109.47121 * 65.00105 * 4 2 1 25 25 H 0.97000 * 120.00119 * 179.97438 * 8 7 5 26 26 H 1.00900 * 111.00119 * 208.95685 * 13 2 1 27 27 H 1.08999 * 109.46820 * 60.00034 * 14 13 2 28 28 H 1.08998 * 109.47380 * 300.00285 * 14 13 2 29 29 H 1.08002 * 121.55569 * 0.02562 * 16 15 14 30 30 H 1.07997 * 127.24387 * 359.97423 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6151 1.3127 6 1 4.0789 -0.0856 0.5396 7 6 4.2303 -1.1928 2.3584 8 7 3.5762 -1.8371 3.3000 9 14 6.0920 -1.0618 2.4367 10 1 6.4709 0.1610 3.1894 11 1 6.6439 -2.2568 3.1239 12 1 6.6412 -0.9851 1.0592 13 7 2.0197 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5885 -0.5217 -3.5557 16 6 1.7478 -1.1691 -4.4351 17 7 2.3050 -1.7818 -5.4383 18 16 3.9785 -1.5414 -5.3042 19 6 3.9021 -0.6067 -3.8618 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8901 23 1 1.6054 -0.2618 2.1370 24 1 1.7516 -1.7716 1.2056 25 1 4.0605 -2.2439 4.0355 26 1 2.9173 -1.1206 -1.0287 27 1 2.7589 1.0460 -2.1182 28 1 1.0872 0.6163 -2.5525 29 1 0.6769 -1.1715 -4.2954 30 1 4.7295 -0.1780 -3.3159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687222919.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:51 Heat of formation + Delta-G solvation = 6.671438 kcal Electronic energy + Delta-G solvation = -13220.544037 eV Core-core repulsion = 10948.069470 eV Total energy + Delta-G solvation = -2272.474567 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.12266 -37.95608 -34.90170 -33.34153 -30.87721 -29.24205 -27.01057 -25.14133 -24.13360 -21.11514 -20.58501 -18.83070 -18.49221 -16.85839 -16.44519 -16.33734 -15.80310 -14.94593 -14.73230 -14.37716 -14.04285 -13.53823 -13.47267 -13.21675 -13.12965 -12.59211 -12.51821 -12.38405 -12.26892 -11.86314 -11.46332 -11.17390 -11.00397 -10.64088 -10.55944 -9.56610 -9.14427 -8.18299 -6.28658 -0.22081 0.61147 0.93776 1.40424 1.40855 1.50876 1.51206 2.40689 3.14346 3.61537 3.84374 3.98553 4.27496 4.36602 4.53731 4.67155 4.75012 4.77655 4.96023 5.02184 5.08078 5.26797 5.39095 5.52533 5.56419 5.67831 5.86549 6.21898 6.42485 6.63124 6.87380 7.40239 8.93377 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.007278 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.878637 B = 3846.252279 C = 4703.960578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.096 3.904 3 H 0.031 0.969 4 C 0.025 3.975 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.260 1.260 13 N -0.682 5.682 14 C 0.127 3.873 15 C -0.165 4.165 16 C 0.111 3.889 17 N -0.494 5.494 18 S 0.252 5.748 19 C -0.196 4.196 20 H 0.047 0.953 21 H 0.050 0.950 22 H 0.067 0.933 23 H -0.005 1.005 24 H -0.005 1.005 25 H 0.262 0.738 26 H 0.342 0.658 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.202 0.798 30 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 4.522 -14.390 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.013 4.013 3 H 0.049 0.951 4 C -0.012 4.012 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.184 1.184 13 N -0.315 5.315 14 C -0.004 4.004 15 C -0.183 4.183 16 C -0.087 4.087 17 N -0.314 5.314 18 S 0.404 5.596 19 C -0.345 4.345 20 H 0.066 0.934 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.218 0.782 30 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.554 3.041 -16.237 16.528 hybrid contribution 0.999 1.213 2.392 2.862 sum 0.445 4.254 -13.845 14.490 Atomic orbital electron populations 1.21726 0.94342 1.01424 1.01193 1.21437 0.95213 0.94987 0.89691 0.95100 1.19161 0.94870 0.94714 0.92492 1.21545 0.93286 1.33918 1.08249 0.92111 1.25899 1.03259 0.94902 0.95454 1.70097 1.37545 1.36801 1.12756 0.85547 0.79925 0.77437 0.78747 1.20150 1.21300 1.18377 1.60655 1.34087 1.32520 1.04228 1.20527 1.01161 0.92193 0.86557 1.20257 0.92241 1.05198 1.00575 1.23027 1.03642 0.92709 0.89360 1.76762 1.02911 1.25823 1.25905 1.83831 1.09094 1.46231 1.20440 1.26785 1.01164 1.03892 1.02705 0.93393 0.93048 0.91362 0.98668 0.98666 0.92926 0.83884 0.94340 0.88687 0.78166 0.78725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.41 71.98 0.68 -3.52 16 2 C 0.10 3.73 2.59 44.92 0.12 3.84 16 3 H 0.03 1.20 7.80 -2.39 -0.02 1.18 16 4 C 0.03 1.27 4.57 29.85 0.14 1.40 16 5 C -0.53 -28.51 8.12 25.60 0.21 -28.30 16 6 H 0.06 3.07 7.49 -2.91 -0.02 3.05 16 7 C 0.00 0.16 5.46 84.66 0.46 0.62 16 8 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 9 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 13 N -0.68 -23.95 6.30 -495.58 -3.12 -27.07 16 14 C 0.13 3.43 5.74 85.56 0.49 3.92 16 15 C -0.17 -4.20 5.34 -20.68 -0.11 -4.31 16 16 C 0.11 2.75 11.07 84.85 0.94 3.69 16 17 N -0.49 -13.42 12.09 -62.60 -0.76 -14.18 16 18 S 0.25 5.90 23.72 -56.49 -1.34 4.56 16 19 C -0.20 -4.68 11.19 67.11 0.75 -3.93 16 20 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 21 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.07 1.80 7.45 -2.38 -0.02 1.78 16 23 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 24 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 25 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 26 H 0.34 13.58 7.20 -89.69 -0.65 12.93 16 27 H 0.04 1.04 8.04 -2.39 -0.02 1.02 16 28 H 0.09 2.21 7.42 -2.39 -0.02 2.19 16 29 H 0.20 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.20 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -61.91 272.15 1.25 -60.66 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.48 Total: 13.14 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 3.67 Total: -26.58 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -3.59 Total: -96.72 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.34 Total: 4.56 kcal Total: -61.91 1.25 -60.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687222919.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.336 kcal (2) G-P(sol) polarization free energy of solvation -61.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds