Wall clock time and date at job start Mon Mar 30 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00341 * 2 1 4 4 C 1.50699 * 109.47166 * 66.04766 * 3 2 1 5 5 H 1.08002 * 120.00227 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00423 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00465 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99747 * 0.02562 * 6 4 3 9 9 H 1.48508 * 109.47359 * 89.99745 * 8 6 4 10 10 H 1.48505 * 109.47418 * 209.99799 * 8 6 4 11 11 H 1.48500 * 109.47270 * 329.99763 * 8 6 4 12 12 C 1.38883 * 110.99619 * 236.04725 * 2 1 3 13 13 N 1.32939 * 120.54478 * 60.73583 * 12 2 1 14 14 C 1.31798 * 120.82366 * 179.97438 * 13 12 2 15 15 N 1.31757 * 121.99211 * 359.97438 * 14 13 12 16 16 C 1.32728 * 121.00922 * 0.02562 * 15 14 13 17 17 F 1.35097 * 120.47125 * 180.27053 * 16 15 14 18 18 C 1.39022 * 119.06399 * 359.97438 * 16 15 14 19 19 N 1.40251 * 120.90253 * 180.02562 * 18 16 15 20 20 H 1.08989 * 109.47693 * 178.08429 * 1 2 3 21 21 H 1.09003 * 109.46650 * 298.08444 * 1 2 3 22 22 H 1.09004 * 109.47532 * 58.07775 * 1 2 3 23 23 H 1.09000 * 109.47728 * 186.05415 * 3 2 1 24 24 H 1.09004 * 109.47371 * 306.05160 * 3 2 1 25 25 H 0.96998 * 120.00291 * 180.02562 * 7 6 4 26 26 H 1.07997 * 119.00724 * 179.97438 * 14 13 12 27 27 H 0.97002 * 119.99905 * 353.70892 * 19 18 16 28 28 H 0.96997 * 120.00282 * 173.70059 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 1.2984 5 1 1.0747 1.5112 2.0489 6 6 2.0279 3.3490 1.5290 7 7 1.7155 3.9386 2.6623 8 14 3.0010 4.2757 0.2315 9 1 2.0644 4.9804 -0.6805 10 1 3.8883 5.2666 0.8919 11 1 3.8241 3.3169 -0.5486 12 6 1.9666 -0.7242 -1.0755 13 7 1.6862 -0.3600 -2.3229 14 6 2.1559 -1.0429 -3.3477 15 7 2.9172 -2.1063 -3.1878 16 6 3.2445 -2.5370 -1.9758 17 9 4.0303 -3.6254 -1.8245 18 6 2.7723 -1.8486 -0.8641 19 7 3.0948 -2.2695 0.4343 20 1 -0.3634 -1.0270 -0.0343 21 1 -0.3633 0.4838 0.9067 22 1 -0.3634 0.5434 -0.8723 23 1 3.0798 1.3444 -0.1084 24 1 1.5611 1.9274 -0.8309 25 1 1.9901 4.8546 2.8243 26 1 1.9093 -0.7211 -4.3487 27 1 3.5768 -3.1005 0.5691 28 1 2.8359 -1.7298 1.1975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689055000.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:25 Heat of formation + Delta-G solvation = 23.296956 kcal Electronic energy + Delta-G solvation = -15464.842057 eV Core-core repulsion = 12659.168002 eV Total energy + Delta-G solvation = -2805.674056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.092 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.99805 -40.82585 -36.99754 -34.97365 -32.96149 -32.09499 -29.14585 -28.01582 -25.80663 -23.66506 -23.11138 -20.85452 -18.71466 -17.91251 -16.92558 -16.74756 -16.25113 -15.66663 -14.88485 -14.80651 -14.61248 -14.03329 -13.58893 -13.31578 -13.11575 -12.40688 -11.65325 -11.46172 -11.32856 -11.26419 -10.90332 -10.65370 -10.09225 -9.95310 -9.51830 -9.26495 -8.69407 -8.05001 -7.66071 -6.16346 -4.15782 1.01208 1.18286 3.23853 3.31111 3.34775 3.38277 3.80948 3.82511 3.99678 4.33761 4.35130 4.97035 5.10735 5.20317 5.55206 5.87580 6.16782 6.35620 6.52029 6.72102 6.77227 6.91886 7.25571 7.42795 7.51069 7.79817 7.83255 8.20204 8.47080 8.88755 9.43941 10.95910 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.007979 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.064592 B = 3508.514631 C = 3645.237144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.480 5.480 3 C 0.171 3.829 4 C -0.516 4.516 5 H 0.084 0.916 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.309 3.691 13 N -0.511 5.511 14 C 0.269 3.731 15 N -0.521 5.521 16 C 0.260 3.740 17 F -0.111 7.111 18 C 0.130 3.870 19 N -0.843 5.843 20 H 0.047 0.953 21 H 0.090 0.910 22 H 0.036 0.964 23 H 0.026 0.974 24 H 0.006 0.994 25 H 0.266 0.734 26 H 0.199 0.801 27 H 0.400 0.600 28 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 -10.930 -7.245 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.204 5.204 3 C 0.046 3.954 4 C -0.555 4.555 5 H 0.102 0.898 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.700 3.300 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.193 1.193 12 C 0.064 3.936 13 N -0.228 5.228 14 C -0.022 4.022 15 N -0.240 5.240 16 C 0.093 3.907 17 F -0.090 7.090 18 C 0.015 3.985 19 N -0.384 5.384 20 H 0.066 0.934 21 H 0.108 0.892 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.024 0.976 25 H 0.076 0.924 26 H 0.216 0.784 27 H 0.228 0.772 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 1.243 -10.708 -7.585 13.181 hybrid contribution 0.812 0.384 -0.220 0.925 sum 2.055 -10.324 -7.805 13.104 Atomic orbital electron populations 1.22246 0.85039 1.00058 1.02930 1.60077 1.09581 1.18069 1.32686 1.20277 0.95105 0.81774 0.98257 1.20918 1.36432 0.97486 1.00625 0.89801 1.24820 0.95508 0.97217 0.95279 1.69868 1.46352 1.13356 1.23742 0.86895 0.80738 0.80205 0.82154 1.19973 1.21010 1.19320 1.20084 0.93221 0.91780 0.88467 1.68561 1.23237 1.31151 0.99881 1.24202 0.92259 0.87324 0.98420 1.67611 1.15803 1.16825 1.23779 1.17673 0.96252 0.88006 0.88769 1.91577 1.71246 1.50692 1.95509 1.19055 0.96982 0.95295 0.87197 1.42295 1.64377 1.27752 1.03935 0.93412 0.89187 0.94520 0.95621 0.97645 0.92441 0.78438 0.77150 0.74571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.14 60.06 0.55 1.36 15 2 N -0.48 -9.57 4.03 -182.06 -0.73 -10.30 15 3 C 0.17 4.02 3.59 -4.98 -0.02 4.00 15 4 C -0.52 -13.86 9.09 -34.44 -0.31 -14.17 15 5 H 0.08 2.40 7.34 -52.49 -0.39 2.01 15 6 C 0.07 2.07 5.47 -17.82 -0.10 1.98 15 7 N -0.89 -26.35 13.96 55.43 0.77 -25.57 15 8 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 15 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.27 -6.40 6.54 56.52 0.37 -6.03 15 12 C 0.31 5.67 5.31 -154.37 -0.82 4.85 15 13 N -0.51 -9.11 9.97 -13.66 -0.14 -9.25 15 14 C 0.27 4.09 12.28 -92.18 -1.13 2.95 15 15 N -0.52 -8.30 10.44 -14.85 -0.16 -8.46 15 16 C 0.26 4.11 8.52 -16.87 -0.14 3.97 15 17 F -0.11 -1.61 16.80 2.25 0.04 -1.57 15 18 C 0.13 2.10 6.85 -83.08 -0.57 1.53 15 19 N -0.84 -11.33 9.10 32.75 0.30 -11.03 15 20 H 0.05 0.76 8.10 -51.94 -0.42 0.34 15 21 H 0.09 1.73 6.91 -51.93 -0.36 1.37 15 22 H 0.04 0.68 8.02 -51.93 -0.42 0.26 15 23 H 0.03 0.63 7.11 -51.93 -0.37 0.26 15 24 H 0.01 0.14 7.54 -51.93 -0.39 -0.25 15 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 26 H 0.20 2.23 8.06 -52.49 -0.42 1.81 15 27 H 0.40 4.26 8.45 -40.82 -0.34 3.92 15 28 H 0.42 5.95 8.25 -40.82 -0.34 5.61 15 LS Contribution 250.87 15.07 3.78 3.78 Total: -1.00 -29.75 250.87 -5.96 -35.71 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.61 Total: 3.75 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.54 Total: 6.47 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: 0.05 Total: -64.60 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.75 -5.96 -35.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689055000.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.009 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds