Wall clock time and date at job start Mon Mar 30 2020 03:28:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.46896 * 111.00341 * 2 1
4 4 C 1.50699 * 109.47166 * 66.04766 * 3 2 1
5 5 H 1.08002 * 120.00227 * 0.02562 * 4 3 2
6 6 C 1.37877 * 120.00423 * 179.97438 * 4 3 2
7 7 N 1.31510 * 120.00465 * 180.02562 * 6 4 3
8 8 Si 1.86796 * 119.99747 * 0.02562 * 6 4 3
9 9 H 1.48508 * 109.47359 * 89.99745 * 8 6 4
10 10 H 1.48505 * 109.47418 * 209.99799 * 8 6 4
11 11 H 1.48500 * 109.47270 * 329.99763 * 8 6 4
12 12 C 1.38883 * 110.99619 * 236.04725 * 2 1 3
13 13 N 1.32939 * 120.54478 * 60.73583 * 12 2 1
14 14 C 1.31798 * 120.82366 * 179.97438 * 13 12 2
15 15 N 1.31757 * 121.99211 * 359.97438 * 14 13 12
16 16 C 1.32728 * 121.00922 * 0.02562 * 15 14 13
17 17 F 1.35097 * 120.47125 * 180.27053 * 16 15 14
18 18 C 1.39022 * 119.06399 * 359.97438 * 16 15 14
19 19 N 1.40251 * 120.90253 * 180.02562 * 18 16 15
20 20 H 1.08989 * 109.47693 * 178.08429 * 1 2 3
21 21 H 1.09003 * 109.46650 * 298.08444 * 1 2 3
22 22 H 1.09004 * 109.47532 * 58.07775 * 1 2 3
23 23 H 1.09000 * 109.47728 * 186.05415 * 3 2 1
24 24 H 1.09004 * 109.47371 * 306.05160 * 3 2 1
25 25 H 0.96998 * 120.00291 * 180.02562 * 7 6 4
26 26 H 1.07997 * 119.00724 * 179.97438 * 14 13 12
27 27 H 0.97002 * 119.99905 * 353.70892 * 19 18 16
28 28 H 0.96997 * 120.00282 * 173.70059 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6371 2.0471 1.2984
5 1 1.0747 1.5112 2.0489
6 6 2.0279 3.3490 1.5290
7 7 1.7155 3.9386 2.6623
8 14 3.0010 4.2757 0.2315
9 1 2.0644 4.9804 -0.6805
10 1 3.8883 5.2666 0.8919
11 1 3.8241 3.3169 -0.5486
12 6 1.9666 -0.7242 -1.0755
13 7 1.6862 -0.3600 -2.3229
14 6 2.1559 -1.0429 -3.3477
15 7 2.9172 -2.1063 -3.1878
16 6 3.2445 -2.5370 -1.9758
17 9 4.0303 -3.6254 -1.8245
18 6 2.7723 -1.8486 -0.8641
19 7 3.0948 -2.2695 0.4343
20 1 -0.3634 -1.0270 -0.0343
21 1 -0.3633 0.4838 0.9067
22 1 -0.3634 0.5434 -0.8723
23 1 3.0798 1.3444 -0.1084
24 1 1.5611 1.9274 -0.8309
25 1 1.9901 4.8546 2.8243
26 1 1.9093 -0.7211 -4.3487
27 1 3.5768 -3.1005 0.5691
28 1 2.8359 -1.7298 1.1975
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689055000.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:25
Heat of formation + Delta-G solvation = 1.888044 kcal
Electronic energy + Delta-G solvation = -15465.770417 eV
Core-core repulsion = 12659.168002 eV
Total energy + Delta-G solvation = -2806.602416 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 226.092 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-50.19398 -42.11569 -38.50138 -36.19980 -34.82953 -33.65190 -30.53859 -29.76581
-27.30191 -24.99982 -24.65108 -22.52084 -19.98725 -19.37612 -18.74901 -17.94329
-17.51065 -17.03180 -16.63034 -16.13646 -15.92120 -15.65573 -14.92231 -14.74318
-14.71116 -14.35090 -13.36924 -13.07443 -12.74836 -12.62196 -12.52053 -12.38257
-11.89589 -11.57961 -11.41039 -10.81825 -10.59198 -9.65962 -8.85244 -8.30452
-6.34025 -0.30487 -0.04440 1.33394 1.35491 1.44284 2.11898 2.31723
2.56352 2.62698 2.66048 3.03252 3.19275 3.68422 3.73894 4.40242
4.44836 4.63809 4.78544 4.93118 5.08709 5.19416 5.41807 5.65458
5.77221 6.03371 6.21611 6.51774 6.71830 6.74262 6.95807 7.29341
8.84834
Molecular weight = 226.09amu
Principal moments of inertia in cm(-1)
A = 0.035886 B = 0.007979 C = 0.007679
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 780.064592 B = 3508.514631 C = 3645.237144
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.050 3.950
2 N -0.481 5.481
3 C 0.186 3.814
4 C -0.514 4.514
5 H 0.055 0.945
6 C 0.021 3.979
7 N -0.938 5.938
8 Si 0.935 3.065
9 H -0.267 1.267
10 H -0.279 1.279
11 H -0.261 1.261
12 C 0.281 3.719
13 N -0.528 5.528
14 C 0.271 3.729
15 N -0.523 5.523
16 C 0.263 3.737
17 F -0.102 7.102
18 C 0.133 3.867
19 N -0.832 5.832
20 H 0.073 0.927
21 H 0.072 0.928
22 H 0.032 0.968
23 H 0.019 0.981
24 H -0.002 1.002
25 H 0.268 0.732
26 H 0.236 0.764
27 H 0.414 0.586
28 H 0.419 0.581
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.020 -11.770 -8.917 14.904
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.097 4.097
2 N -0.204 5.204
3 C 0.060 3.940
4 C -0.553 4.553
5 H 0.073 0.927
6 C -0.178 4.178
7 N -0.578 5.578
8 Si 0.759 3.241
9 H -0.192 1.192
10 H -0.205 1.205
11 H -0.185 1.185
12 C 0.037 3.963
13 N -0.245 5.245
14 C -0.019 4.019
15 N -0.242 5.242
16 C 0.095 3.905
17 F -0.081 7.081
18 C 0.016 3.984
19 N -0.372 5.372
20 H 0.091 0.909
21 H 0.091 0.909
22 H 0.051 0.949
23 H 0.037 0.963
24 H 0.016 0.984
25 H 0.077 0.923
26 H 0.252 0.748
27 H 0.245 0.755
28 H 0.252 0.748
Dipole moment (debyes) X Y Z Total
from point charges 1.997 -11.585 -9.251 14.959
hybrid contribution 0.559 0.512 0.300 0.815
sum 2.556 -11.073 -8.950 14.466
Atomic orbital electron populations
1.22191 0.84375 1.01393 1.01746 1.59872 1.10230 1.16008 1.34302
1.19914 0.94527 0.83706 0.95852 1.21102 1.35329 0.97527 1.01314
0.92694 1.25603 0.96673 0.98293 0.97182 1.69994 1.48086 1.13941
1.25802 0.85907 0.79502 0.78994 0.79677 1.19218 1.20477 1.18533
1.19993 0.95044 0.92886 0.88374 1.68508 1.23825 1.32038 1.00160
1.24904 0.91242 0.86556 0.99184 1.67713 1.15832 1.17001 1.23685
1.17725 0.96013 0.88032 0.88711 1.91602 1.70898 1.50153 1.95480
1.18985 0.96416 0.94781 0.88186 1.42289 1.63824 1.28137 1.02979
0.90869 0.90949 0.94938 0.96342 0.98382 0.92257 0.74825 0.75488
0.74830
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 1.80 9.14 127.69 1.17 2.97 15
2 N -0.48 -18.84 4.03 -729.91 -2.94 -21.78 15
3 C 0.19 8.68 3.59 85.56 0.31 8.99 15
4 C -0.51 -27.98 9.09 25.60 0.23 -27.75 15
5 H 0.05 3.24 7.34 -2.91 -0.02 3.22 15
6 C 0.02 1.19 5.47 84.66 0.46 1.65 15
7 N -0.94 -56.10 13.96 21.45 0.30 -55.80 15
8 Si 0.93 43.32 27.47 68.60 1.88 45.20 15
9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15
10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15
11 H -0.26 -11.69 6.54 99.48 0.65 -11.04 15
12 C 0.28 9.87 5.31 133.14 0.71 10.58 15
13 N -0.53 -17.76 9.97 -197.12 -1.97 -19.73 15
14 C 0.27 7.48 12.28 180.89 2.22 9.70 15
15 N -0.52 -15.21 10.44 -200.90 -2.10 -17.31 15
16 C 0.26 7.66 8.52 84.75 0.72 8.38 15
17 F -0.10 -2.68 16.80 44.97 0.76 -1.93 15
18 C 0.13 4.03 6.85 38.39 0.26 4.30 15
19 N -0.83 -20.85 9.10 -50.31 -0.46 -21.31 15
20 H 0.07 2.24 8.10 -2.39 -0.02 2.22 15
21 H 0.07 2.84 6.91 -2.39 -0.02 2.82 15
22 H 0.03 1.18 8.02 -2.39 -0.02 1.16 15
23 H 0.02 0.89 7.11 -2.39 -0.02 0.87 15
24 H 0.00 -0.08 7.54 -2.38 -0.02 -0.10 15
25 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15
26 H 0.24 4.43 8.06 -2.91 -0.02 4.41 15
27 H 0.41 7.92 8.45 -92.71 -0.78 7.14 15
28 H 0.42 11.31 8.25 -92.71 -0.77 10.55 15
Total: -1.00 -62.71 250.87 1.17 -61.54
By element:
Atomic # 1 Polarization: 12.68 SS G_CDS: -0.39 Total: 12.29 kcal
Atomic # 6 Polarization: 12.74 SS G_CDS: 6.08 Total: 18.82 kcal
Atomic # 7 Polarization: -128.76 SS G_CDS: -7.17 Total: -135.93 kcal
Atomic # 9 Polarization: -2.68 SS G_CDS: 0.76 Total: -1.93 kcal
Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal
Total: -62.71 1.17 -61.54 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689055000.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.432 kcal
(2) G-P(sol) polarization free energy of solvation -62.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.721 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.888 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds