Wall clock time and date at job start Mon Mar 30 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00341 * 2 1 4 4 C 1.50699 * 109.47166 * 66.04766 * 3 2 1 5 5 H 1.08002 * 120.00227 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00423 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00465 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99747 * 0.02562 * 6 4 3 9 9 H 1.48508 * 109.47359 * 89.99745 * 8 6 4 10 10 H 1.48505 * 109.47418 * 209.99799 * 8 6 4 11 11 H 1.48500 * 109.47270 * 329.99763 * 8 6 4 12 12 C 1.38883 * 110.99619 * 236.04725 * 2 1 3 13 13 N 1.32939 * 120.54478 * 60.73583 * 12 2 1 14 14 C 1.31798 * 120.82366 * 179.97438 * 13 12 2 15 15 N 1.31757 * 121.99211 * 359.97438 * 14 13 12 16 16 C 1.32728 * 121.00922 * 0.02562 * 15 14 13 17 17 F 1.35097 * 120.47125 * 180.27053 * 16 15 14 18 18 C 1.39022 * 119.06399 * 359.97438 * 16 15 14 19 19 N 1.40251 * 120.90253 * 180.02562 * 18 16 15 20 20 H 1.08989 * 109.47693 * 178.08429 * 1 2 3 21 21 H 1.09003 * 109.46650 * 298.08444 * 1 2 3 22 22 H 1.09004 * 109.47532 * 58.07775 * 1 2 3 23 23 H 1.09000 * 109.47728 * 186.05415 * 3 2 1 24 24 H 1.09004 * 109.47371 * 306.05160 * 3 2 1 25 25 H 0.96998 * 120.00291 * 180.02562 * 7 6 4 26 26 H 1.07997 * 119.00724 * 179.97438 * 14 13 12 27 27 H 0.97002 * 119.99905 * 353.70892 * 19 18 16 28 28 H 0.96997 * 120.00282 * 173.70059 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 1.2984 5 1 1.0747 1.5112 2.0489 6 6 2.0279 3.3490 1.5290 7 7 1.7155 3.9386 2.6623 8 14 3.0010 4.2757 0.2315 9 1 2.0644 4.9804 -0.6805 10 1 3.8883 5.2666 0.8919 11 1 3.8241 3.3169 -0.5486 12 6 1.9666 -0.7242 -1.0755 13 7 1.6862 -0.3600 -2.3229 14 6 2.1559 -1.0429 -3.3477 15 7 2.9172 -2.1063 -3.1878 16 6 3.2445 -2.5370 -1.9758 17 9 4.0303 -3.6254 -1.8245 18 6 2.7723 -1.8486 -0.8641 19 7 3.0948 -2.2695 0.4343 20 1 -0.3634 -1.0270 -0.0343 21 1 -0.3633 0.4838 0.9067 22 1 -0.3634 0.5434 -0.8723 23 1 3.0798 1.3444 -0.1084 24 1 1.5611 1.9274 -0.8309 25 1 1.9901 4.8546 2.8243 26 1 1.9093 -0.7211 -4.3487 27 1 3.5768 -3.1005 0.5691 28 1 2.8359 -1.7298 1.1975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689055000.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:25 Heat of formation + Delta-G solvation = 1.888044 kcal Electronic energy + Delta-G solvation = -15465.770417 eV Core-core repulsion = 12659.168002 eV Total energy + Delta-G solvation = -2806.602416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.19398 -42.11569 -38.50138 -36.19980 -34.82953 -33.65190 -30.53859 -29.76581 -27.30191 -24.99982 -24.65108 -22.52084 -19.98725 -19.37612 -18.74901 -17.94329 -17.51065 -17.03180 -16.63034 -16.13646 -15.92120 -15.65573 -14.92231 -14.74318 -14.71116 -14.35090 -13.36924 -13.07443 -12.74836 -12.62196 -12.52053 -12.38257 -11.89589 -11.57961 -11.41039 -10.81825 -10.59198 -9.65962 -8.85244 -8.30452 -6.34025 -0.30487 -0.04440 1.33394 1.35491 1.44284 2.11898 2.31723 2.56352 2.62698 2.66048 3.03252 3.19275 3.68422 3.73894 4.40242 4.44836 4.63809 4.78544 4.93118 5.08709 5.19416 5.41807 5.65458 5.77221 6.03371 6.21611 6.51774 6.71830 6.74262 6.95807 7.29341 8.84834 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.007979 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.064592 B = 3508.514631 C = 3645.237144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.481 5.481 3 C 0.186 3.814 4 C -0.514 4.514 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.938 5.938 8 Si 0.935 3.065 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.261 1.261 12 C 0.281 3.719 13 N -0.528 5.528 14 C 0.271 3.729 15 N -0.523 5.523 16 C 0.263 3.737 17 F -0.102 7.102 18 C 0.133 3.867 19 N -0.832 5.832 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.032 0.968 23 H 0.019 0.981 24 H -0.002 1.002 25 H 0.268 0.732 26 H 0.236 0.764 27 H 0.414 0.586 28 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 -11.770 -8.917 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.204 5.204 3 C 0.060 3.940 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.578 5.578 8 Si 0.759 3.241 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.185 1.185 12 C 0.037 3.963 13 N -0.245 5.245 14 C -0.019 4.019 15 N -0.242 5.242 16 C 0.095 3.905 17 F -0.081 7.081 18 C 0.016 3.984 19 N -0.372 5.372 20 H 0.091 0.909 21 H 0.091 0.909 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.016 0.984 25 H 0.077 0.923 26 H 0.252 0.748 27 H 0.245 0.755 28 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.997 -11.585 -9.251 14.959 hybrid contribution 0.559 0.512 0.300 0.815 sum 2.556 -11.073 -8.950 14.466 Atomic orbital electron populations 1.22191 0.84375 1.01393 1.01746 1.59872 1.10230 1.16008 1.34302 1.19914 0.94527 0.83706 0.95852 1.21102 1.35329 0.97527 1.01314 0.92694 1.25603 0.96673 0.98293 0.97182 1.69994 1.48086 1.13941 1.25802 0.85907 0.79502 0.78994 0.79677 1.19218 1.20477 1.18533 1.19993 0.95044 0.92886 0.88374 1.68508 1.23825 1.32038 1.00160 1.24904 0.91242 0.86556 0.99184 1.67713 1.15832 1.17001 1.23685 1.17725 0.96013 0.88032 0.88711 1.91602 1.70898 1.50153 1.95480 1.18985 0.96416 0.94781 0.88186 1.42289 1.63824 1.28137 1.02979 0.90869 0.90949 0.94938 0.96342 0.98382 0.92257 0.74825 0.75488 0.74830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.80 9.14 127.69 1.17 2.97 15 2 N -0.48 -18.84 4.03 -729.91 -2.94 -21.78 15 3 C 0.19 8.68 3.59 85.56 0.31 8.99 15 4 C -0.51 -27.98 9.09 25.60 0.23 -27.75 15 5 H 0.05 3.24 7.34 -2.91 -0.02 3.22 15 6 C 0.02 1.19 5.47 84.66 0.46 1.65 15 7 N -0.94 -56.10 13.96 21.45 0.30 -55.80 15 8 Si 0.93 43.32 27.47 68.60 1.88 45.20 15 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 11 H -0.26 -11.69 6.54 99.48 0.65 -11.04 15 12 C 0.28 9.87 5.31 133.14 0.71 10.58 15 13 N -0.53 -17.76 9.97 -197.12 -1.97 -19.73 15 14 C 0.27 7.48 12.28 180.89 2.22 9.70 15 15 N -0.52 -15.21 10.44 -200.90 -2.10 -17.31 15 16 C 0.26 7.66 8.52 84.75 0.72 8.38 15 17 F -0.10 -2.68 16.80 44.97 0.76 -1.93 15 18 C 0.13 4.03 6.85 38.39 0.26 4.30 15 19 N -0.83 -20.85 9.10 -50.31 -0.46 -21.31 15 20 H 0.07 2.24 8.10 -2.39 -0.02 2.22 15 21 H 0.07 2.84 6.91 -2.39 -0.02 2.82 15 22 H 0.03 1.18 8.02 -2.39 -0.02 1.16 15 23 H 0.02 0.89 7.11 -2.39 -0.02 0.87 15 24 H 0.00 -0.08 7.54 -2.38 -0.02 -0.10 15 25 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 26 H 0.24 4.43 8.06 -2.91 -0.02 4.41 15 27 H 0.41 7.92 8.45 -92.71 -0.78 7.14 15 28 H 0.42 11.31 8.25 -92.71 -0.77 10.55 15 Total: -1.00 -62.71 250.87 1.17 -61.54 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -0.39 Total: 12.29 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 6.08 Total: 18.82 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -7.17 Total: -135.93 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.76 Total: -1.93 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -62.71 1.17 -61.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689055000.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.432 kcal (2) G-P(sol) polarization free energy of solvation -62.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds