Wall clock time and date at job start Mon Mar 30 2020 02:58:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46498 * 109.47548 * 2 1
4 4 C 1.37680 * 126.50603 * 265.03131 * 3 2 1
5 5 C 1.34387 * 106.96113 * 179.97438 * 4 3 2
6 6 N 1.34362 * 108.34149 * 359.73718 * 5 4 3
7 7 C 1.31265 * 109.30767 * 0.43495 * 6 5 4
8 8 S 1.76199 * 125.80335 * 179.83098 * 7 6 5
9 9 C 1.81002 * 100.00182 * 359.69531 * 8 7 6
10 10 H 1.08998 * 109.47193 * 54.99436 * 9 8 7
11 11 C 1.52999 * 109.46727 * 294.99972 * 9 8 7
12 12 C 1.50697 * 109.47288 * 175.00126 * 9 8 7
13 13 H 1.07998 * 119.99867 * 359.97438 * 12 9 8
14 14 C 1.37872 * 119.99995 * 179.97438 * 12 9 8
15 15 N 1.31516 * 120.00299 * 0.02562 * 14 12 9
16 16 Si 1.86804 * 120.00200 * 179.97438 * 14 12 9
17 17 H 1.48498 * 109.46922 * 0.02562 * 16 14 12
18 18 H 1.48495 * 109.47362 * 120.00114 * 16 14 12
19 19 H 1.48504 * 109.46968 * 240.00203 * 16 14 12
20 20 H 1.09006 * 109.46781 * 299.99734 * 1 2 3
21 21 H 1.09001 * 109.47159 * 59.99190 * 1 2 3
22 22 H 1.08994 * 109.47611 * 180.02562 * 1 2 3
23 23 H 1.09006 * 109.46781 * 240.00266 * 2 1 3
24 24 H 1.09001 * 109.47159 * 120.00810 * 2 1 3
25 25 H 1.08004 * 126.51833 * 359.97438 * 4 3 2
26 26 H 1.07999 * 125.82977 * 180.02562 * 5 4 3
27 27 H 1.08999 * 109.47402 * 60.00019 * 11 9 8
28 28 H 1.09008 * 109.47032 * 180.02562 * 11 9 8
29 29 H 1.09001 * 109.47448 * 300.00106 * 11 9 8
30 30 H 0.96996 * 120.00283 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3818 2.1214 -1.1025
5 6 2.7668 3.3286 -0.6547
6 7 2.6419 3.3428 0.6831
7 6 2.1983 2.1763 1.0900
8 16 1.8824 1.7199 2.7623
9 6 2.3471 3.2554 3.6004
10 1 1.7837 4.0861 3.1755
11 6 3.8447 3.5058 3.4124
12 6 2.0380 3.1386 5.0707
13 1 1.6043 2.2297 5.4607
14 6 2.3088 4.1921 5.9178
15 7 2.8364 5.2991 5.4428
16 14 1.9250 4.0476 7.7403
17 1 1.3402 2.7113 8.0186
18 1 3.1753 4.2132 8.5242
19 1 0.9548 5.1034 8.1270
20 1 -0.3633 0.5138 0.8901
21 1 -0.3633 0.5140 -0.8899
22 1 -0.3634 -1.0276 0.0005
23 1 1.8933 -0.5138 -0.8901
24 1 1.8933 -0.5140 0.8899
25 1 2.3614 1.7942 -2.1316
26 1 3.1127 4.1489 -1.2661
27 1 4.0683 3.5903 2.3490
28 1 4.1247 4.4303 3.9175
29 1 4.4082 2.6751 3.8372
30 1 3.0266 6.0404 6.0387
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000689749000.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:26
Heat of formation + Delta-G solvation = 51.664370 kcal
Electronic energy + Delta-G solvation = -13445.310724 eV
Core-core repulsion = 11174.787197 eV
Total energy + Delta-G solvation = -2270.523527 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 226.083 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-41.28756 -34.74353 -33.88606 -30.41446 -29.71075 -28.84247 -25.18718 -23.66610
-21.43560 -21.05108 -20.47951 -17.47989 -16.15964 -15.40430 -14.96774 -14.60938
-14.32192 -13.62774 -13.42197 -13.08395 -12.69433 -12.49203 -12.02087 -11.79974
-11.31598 -11.04782 -10.91438 -10.73682 -10.40749 -10.14286 -9.50051 -9.32053
-9.05848 -8.84401 -8.71610 -8.39795 -6.57192 -6.09154 -4.20325 2.21260
2.38336 3.24630 3.26842 3.34246 3.38273 3.61028 3.67577 4.37771
4.72009 5.02203 5.10860 5.21644 5.26541 5.58525 5.61925 5.71629
6.02894 6.09609 6.59427 6.90020 7.05010 7.13453 7.26209 7.37729
7.56817 7.76888 7.99136 8.17748 8.49379 8.78459 9.43010 10.95803
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.043974 B = 0.007624 C = 0.006759
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 636.580910 B = 3671.773141 C = 4141.639123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.104 3.896
3 N -0.456 5.456
4 C -0.073 4.073
5 C -0.023 4.023
6 N -0.482 5.482
7 C 0.219 3.781
8 S -0.093 6.093
9 C 0.110 3.890
10 H 0.058 0.942
11 C -0.139 4.139
12 C -0.516 4.516
13 H 0.065 0.935
14 C 0.072 3.928
15 N -0.880 5.880
16 Si 0.904 3.096
17 H -0.271 1.271
18 H -0.282 1.282
19 H -0.282 1.282
20 H 0.071 0.929
21 H 0.058 0.942
22 H 0.073 0.927
23 H 0.086 0.914
24 H 0.093 0.907
25 H 0.167 0.833
26 H 0.164 0.836
27 H 0.039 0.961
28 H 0.089 0.911
29 H 0.027 0.973
30 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.098 -8.644 -10.511 13.770
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.018 4.018
3 N -0.144 5.144
4 C -0.208 4.208
5 C -0.173 4.173
6 N -0.204 5.204
7 C -0.151 4.151
8 S 0.139 5.861
9 C -0.018 4.018
10 H 0.076 0.924
11 C -0.198 4.198
12 C -0.556 4.556
13 H 0.083 0.917
14 C -0.132 4.132
15 N -0.517 5.517
16 Si 0.731 3.269
17 H -0.196 1.196
18 H -0.207 1.207
19 H -0.208 1.208
20 H 0.090 0.910
21 H 0.077 0.923
22 H 0.092 0.908
23 H 0.105 0.895
24 H 0.111 0.889
25 H 0.185 0.815
26 H 0.181 0.819
27 H 0.058 0.942
28 H 0.108 0.892
29 H 0.047 0.953
30 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -2.322 -8.974 -9.496 13.271
hybrid contribution 0.123 0.477 -0.325 0.590
sum -2.198 -8.497 -9.821 13.172
Atomic orbital electron populations
1.22142 0.94248 1.02787 1.03533 1.21755 0.95712 0.80254 1.04104
1.45727 1.50474 1.12286 1.05867 1.22572 1.11545 0.94497 0.92140
1.22283 1.06138 0.97012 0.91850 1.70957 1.19745 1.18691 1.10974
1.25675 1.04768 0.89430 0.95224 1.85268 1.83078 1.29835 0.87886
1.20947 0.97381 0.87492 0.96001 0.92362 1.22024 0.95707 1.02644
0.99453 1.20695 1.43248 1.01482 0.90192 0.91735 1.24875 0.94566
0.94821 0.98982 1.69925 1.42106 1.04346 1.35332 0.86343 0.78122
0.78295 0.84135 1.19562 1.20746 1.20753 0.90962 0.92256 0.90847
0.89521 0.88910 0.81532 0.81856 0.94249 0.89223 0.95341 0.92572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.88 10.24 37.16 0.38 -1.50 16
2 C 0.10 1.28 6.64 -4.04 -0.03 1.25 16
3 N -0.46 -7.56 2.80 -116.93 -0.33 -7.89 16
4 C -0.07 -1.10 11.60 -16.28 -0.19 -1.29 16
5 C -0.02 -0.40 11.84 -17.80 -0.21 -0.61 16
6 N -0.48 -10.65 8.72 -13.45 -0.12 -10.77 16
7 C 0.22 4.57 7.66 -88.75 -0.68 3.89 16
8 S -0.09 -2.05 21.11 -107.50 -2.27 -4.32 16
9 C 0.11 2.90 2.26 -27.89 -0.06 2.83 16
10 H 0.06 1.71 8.14 -51.92 -0.42 1.28 16
11 C -0.14 -3.60 8.78 37.16 0.33 -3.28 16
12 C -0.52 -14.32 8.58 -34.44 -0.30 -14.61 16
13 H 0.06 1.77 7.71 -52.49 -0.40 1.36 16
14 C 0.07 1.99 5.30 -17.82 -0.09 1.89 16
15 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16
16 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16
17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
20 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
23 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16
24 H 0.09 1.16 7.90 -51.93 -0.41 0.75 16
25 H 0.17 1.80 8.06 -52.48 -0.42 1.38 16
26 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16
27 H 0.04 0.99 5.89 -51.93 -0.31 0.68 16
28 H 0.09 2.51 6.07 -51.92 -0.32 2.19 16
29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16
30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
LS Contribution 268.55 15.07 4.05 4.05
Total: -1.00 -30.95 268.55 -7.87 -38.82
By element:
Atomic # 1 Polarization: 3.94 SS G_CDS: -3.95 Total: -0.01 kcal
Atomic # 6 Polarization: -10.56 SS G_CDS: -0.85 Total: -11.42 kcal
Atomic # 7 Polarization: -43.38 SS G_CDS: 0.18 Total: -43.20 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Atomic # 16 Polarization: -2.05 SS G_CDS: -2.27 Total: -4.32 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -30.95 -7.87 -38.82 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689749000.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.481 kcal
(2) G-P(sol) polarization free energy of solvation -30.951 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.531 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.664 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds