Wall clock time and date at job start Mon Mar 30 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47548 * 2 1 4 4 C 1.37680 * 126.50603 * 265.03131 * 3 2 1 5 5 C 1.34387 * 106.96113 * 179.97438 * 4 3 2 6 6 N 1.34362 * 108.34149 * 359.73718 * 5 4 3 7 7 C 1.31265 * 109.30767 * 0.43495 * 6 5 4 8 8 S 1.76199 * 125.80335 * 179.83098 * 7 6 5 9 9 C 1.81002 * 100.00182 * 359.69531 * 8 7 6 10 10 H 1.08998 * 109.47193 * 54.99436 * 9 8 7 11 11 C 1.52999 * 109.46727 * 294.99972 * 9 8 7 12 12 C 1.50697 * 109.47288 * 175.00126 * 9 8 7 13 13 H 1.07998 * 119.99867 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99995 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00299 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00200 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.46922 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47362 * 120.00114 * 16 14 12 19 19 H 1.48504 * 109.46968 * 240.00203 * 16 14 12 20 20 H 1.09006 * 109.46781 * 299.99734 * 1 2 3 21 21 H 1.09001 * 109.47159 * 59.99190 * 1 2 3 22 22 H 1.08994 * 109.47611 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46781 * 240.00266 * 2 1 3 24 24 H 1.09001 * 109.47159 * 120.00810 * 2 1 3 25 25 H 1.08004 * 126.51833 * 359.97438 * 4 3 2 26 26 H 1.07999 * 125.82977 * 180.02562 * 5 4 3 27 27 H 1.08999 * 109.47402 * 60.00019 * 11 9 8 28 28 H 1.09008 * 109.47032 * 180.02562 * 11 9 8 29 29 H 1.09001 * 109.47448 * 300.00106 * 11 9 8 30 30 H 0.96996 * 120.00283 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3818 2.1214 -1.1025 5 6 2.7668 3.3286 -0.6547 6 7 2.6419 3.3428 0.6831 7 6 2.1983 2.1763 1.0900 8 16 1.8824 1.7199 2.7623 9 6 2.3471 3.2554 3.6004 10 1 1.7837 4.0861 3.1755 11 6 3.8447 3.5058 3.4124 12 6 2.0380 3.1386 5.0707 13 1 1.6043 2.2297 5.4607 14 6 2.3088 4.1921 5.9178 15 7 2.8364 5.2991 5.4428 16 14 1.9250 4.0476 7.7403 17 1 1.3402 2.7113 8.0186 18 1 3.1753 4.2132 8.5242 19 1 0.9548 5.1034 8.1270 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5140 0.8899 25 1 2.3614 1.7942 -2.1316 26 1 3.1127 4.1489 -1.2661 27 1 4.0683 3.5903 2.3490 28 1 4.1247 4.4303 3.9175 29 1 4.4082 2.6751 3.8372 30 1 3.0266 6.0404 6.0387 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689749000.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:26 Heat of formation + Delta-G solvation = 51.664370 kcal Electronic energy + Delta-G solvation = -13445.310724 eV Core-core repulsion = 11174.787197 eV Total energy + Delta-G solvation = -2270.523527 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.28756 -34.74353 -33.88606 -30.41446 -29.71075 -28.84247 -25.18718 -23.66610 -21.43560 -21.05108 -20.47951 -17.47989 -16.15964 -15.40430 -14.96774 -14.60938 -14.32192 -13.62774 -13.42197 -13.08395 -12.69433 -12.49203 -12.02087 -11.79974 -11.31598 -11.04782 -10.91438 -10.73682 -10.40749 -10.14286 -9.50051 -9.32053 -9.05848 -8.84401 -8.71610 -8.39795 -6.57192 -6.09154 -4.20325 2.21260 2.38336 3.24630 3.26842 3.34246 3.38273 3.61028 3.67577 4.37771 4.72009 5.02203 5.10860 5.21644 5.26541 5.58525 5.61925 5.71629 6.02894 6.09609 6.59427 6.90020 7.05010 7.13453 7.26209 7.37729 7.56817 7.76888 7.99136 8.17748 8.49379 8.78459 9.43010 10.95803 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.043974 B = 0.007624 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.580910 B = 3671.773141 C = 4141.639123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.456 5.456 4 C -0.073 4.073 5 C -0.023 4.023 6 N -0.482 5.482 7 C 0.219 3.781 8 S -0.093 6.093 9 C 0.110 3.890 10 H 0.058 0.942 11 C -0.139 4.139 12 C -0.516 4.516 13 H 0.065 0.935 14 C 0.072 3.928 15 N -0.880 5.880 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.167 0.833 26 H 0.164 0.836 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.027 0.973 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 -8.644 -10.511 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.144 5.144 4 C -0.208 4.208 5 C -0.173 4.173 6 N -0.204 5.204 7 C -0.151 4.151 8 S 0.139 5.861 9 C -0.018 4.018 10 H 0.076 0.924 11 C -0.198 4.198 12 C -0.556 4.556 13 H 0.083 0.917 14 C -0.132 4.132 15 N -0.517 5.517 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.208 1.208 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.111 0.889 25 H 0.185 0.815 26 H 0.181 0.819 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.322 -8.974 -9.496 13.271 hybrid contribution 0.123 0.477 -0.325 0.590 sum -2.198 -8.497 -9.821 13.172 Atomic orbital electron populations 1.22142 0.94248 1.02787 1.03533 1.21755 0.95712 0.80254 1.04104 1.45727 1.50474 1.12286 1.05867 1.22572 1.11545 0.94497 0.92140 1.22283 1.06138 0.97012 0.91850 1.70957 1.19745 1.18691 1.10974 1.25675 1.04768 0.89430 0.95224 1.85268 1.83078 1.29835 0.87886 1.20947 0.97381 0.87492 0.96001 0.92362 1.22024 0.95707 1.02644 0.99453 1.20695 1.43248 1.01482 0.90192 0.91735 1.24875 0.94566 0.94821 0.98982 1.69925 1.42106 1.04346 1.35332 0.86343 0.78122 0.78295 0.84135 1.19562 1.20746 1.20753 0.90962 0.92256 0.90847 0.89521 0.88910 0.81532 0.81856 0.94249 0.89223 0.95341 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 37.16 0.38 -1.50 16 2 C 0.10 1.28 6.64 -4.04 -0.03 1.25 16 3 N -0.46 -7.56 2.80 -116.93 -0.33 -7.89 16 4 C -0.07 -1.10 11.60 -16.28 -0.19 -1.29 16 5 C -0.02 -0.40 11.84 -17.80 -0.21 -0.61 16 6 N -0.48 -10.65 8.72 -13.45 -0.12 -10.77 16 7 C 0.22 4.57 7.66 -88.75 -0.68 3.89 16 8 S -0.09 -2.05 21.11 -107.50 -2.27 -4.32 16 9 C 0.11 2.90 2.26 -27.89 -0.06 2.83 16 10 H 0.06 1.71 8.14 -51.92 -0.42 1.28 16 11 C -0.14 -3.60 8.78 37.16 0.33 -3.28 16 12 C -0.52 -14.32 8.58 -34.44 -0.30 -14.61 16 13 H 0.06 1.77 7.71 -52.49 -0.40 1.36 16 14 C 0.07 1.99 5.30 -17.82 -0.09 1.89 16 15 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 16 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.09 1.16 7.90 -51.93 -0.41 0.75 16 25 H 0.17 1.80 8.06 -52.48 -0.42 1.38 16 26 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16 27 H 0.04 0.99 5.89 -51.93 -0.31 0.68 16 28 H 0.09 2.51 6.07 -51.92 -0.32 2.19 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 268.55 15.07 4.05 4.05 Total: -1.00 -30.95 268.55 -7.87 -38.82 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -3.95 Total: -0.01 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -0.85 Total: -11.42 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.18 Total: -43.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.27 Total: -4.32 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.95 -7.87 -38.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689749000.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.481 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds