Wall clock time and date at job start Mon Mar 30 2020 03:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47066 * 2 1 4 4 C 1.50702 * 109.46819 * 239.99364 * 2 1 3 5 5 H 1.07994 * 120.00044 * 239.99611 * 4 2 1 6 6 C 1.37876 * 119.99778 * 60.00686 * 4 2 1 7 7 N 1.31510 * 120.00147 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99630 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47045 * 119.99979 * 8 6 4 11 11 H 1.48504 * 109.46744 * 239.99664 * 8 6 4 12 12 C 1.53002 * 109.47049 * 119.99723 * 2 1 3 13 13 C 1.50703 * 109.74020 * 56.21182 * 12 2 1 14 14 O 1.20823 * 119.99736 * 25.60641 * 13 12 2 15 15 O 1.34223 * 120.00205 * 205.60077 * 13 12 2 16 16 C 1.53500 * 109.70808 * 176.81809 * 12 2 1 17 17 C 1.53250 * 108.15874 * 57.29147 * 16 12 2 18 18 C 1.50442 * 109.44174 * 46.82261 * 17 16 12 19 19 C 1.30690 * 122.49502 * 342.54262 * 18 17 16 20 20 O 1.35133 * 123.34130 * 0.40944 * 19 18 17 21 21 H 1.09004 * 109.46975 * 293.50447 * 1 2 3 22 22 H 1.08997 * 109.47086 * 53.50612 * 1 2 3 23 23 H 1.08996 * 109.47174 * 173.50732 * 1 2 3 24 24 H 0.96996 * 120.00257 * 180.02562 * 7 6 4 25 25 H 0.96699 * 117.00322 * 180.02562 * 15 13 12 26 26 H 1.08996 * 109.72382 * 297.62068 * 16 12 2 27 27 H 1.08999 * 109.72435 * 176.95578 * 16 12 2 28 28 H 1.09000 * 109.47822 * 166.81668 * 17 16 12 29 29 H 1.08998 * 109.47345 * 286.83242 * 17 16 12 30 30 H 1.08000 * 118.75338 * 162.52066 * 18 17 16 31 31 H 1.07991 * 118.32470 * 180.43241 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3224 -1.1199 -4.0078 9 1 3.1482 -2.2860 -3.6036 10 1 1.1677 -1.5869 -4.8164 11 1 3.1472 -0.1862 -4.8160 12 6 2.0400 -0.7212 1.2493 13 6 1.4659 -2.1136 1.3032 14 8 1.1270 -2.6671 0.2842 15 8 1.3312 -2.7387 2.4833 16 6 3.5729 -0.7942 1.2154 17 6 4.1168 0.6345 1.1081 18 6 3.4134 1.5143 2.1053 19 6 2.2848 1.1734 2.6692 20 8 1.6522 0.0058 2.4186 21 1 -0.3633 0.4099 0.9424 22 1 -0.3633 0.6112 -0.8261 23 1 -0.3633 -1.0210 -0.1162 24 1 0.7083 1.1607 -3.4844 25 1 0.9585 -3.6309 2.4675 26 1 3.8944 -1.3762 0.3516 27 1 3.9393 -1.2597 2.1303 28 1 5.1868 0.6326 1.3161 29 1 3.9429 1.0149 0.1016 30 1 3.8582 2.4634 2.3654 31 1 1.8346 1.8599 3.3708 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691806618.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:01 Heat of formation + Delta-G solvation = -111.960361 kcal Electronic energy + Delta-G solvation = -16860.822049 eV Core-core repulsion = 14108.157599 eV Total energy + Delta-G solvation = -2752.664450 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.53000 -38.72327 -35.68871 -34.10346 -33.15069 -31.52722 -29.27496 -25.63001 -25.15744 -23.17324 -21.94849 -20.37876 -18.00655 -17.14395 -16.82090 -16.16912 -15.36431 -14.92454 -14.73554 -14.03296 -13.77699 -13.45275 -12.68891 -12.41369 -12.33067 -12.28678 -11.49729 -11.08255 -10.91039 -10.78521 -10.63627 -10.62685 -10.32045 -10.25443 -9.83876 -9.50243 -9.26179 -8.76116 -8.31570 -7.78939 -5.95387 -3.97217 2.71514 2.93795 3.33562 3.41563 3.46469 3.56888 4.15910 4.50058 5.23716 5.36187 5.38780 5.59812 5.82510 5.93797 6.07361 6.17725 6.23278 6.46858 6.78784 6.80531 6.95443 7.02246 7.06524 7.13942 7.24610 7.68318 7.90171 7.99896 8.16243 8.38303 8.62661 8.99295 9.63976 11.12170 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.027213 B = 0.012432 C = 0.010758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.680877 B = 2251.714127 C = 2602.018128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 H 0.052 0.948 4 C -0.488 4.488 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.138 3.862 13 C 0.493 3.507 14 O -0.464 6.464 15 O -0.520 6.520 16 C -0.133 4.133 17 C -0.074 4.074 18 C -0.279 4.279 19 C 0.057 3.943 20 O -0.315 6.315 21 H 0.010 0.990 22 H 0.083 0.917 23 H 0.036 0.964 24 H 0.258 0.742 25 H 0.396 0.604 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 -1.327 8.952 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.070 0.930 4 C -0.526 4.526 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 C 0.099 3.901 13 C 0.332 3.668 14 O -0.348 6.348 15 O -0.332 6.332 16 C -0.171 4.171 17 C -0.111 4.111 18 C -0.299 4.299 19 C -0.006 4.006 20 O -0.229 6.229 21 H 0.030 0.970 22 H 0.102 0.898 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.252 0.748 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.382 -1.078 8.615 9.317 hybrid contribution 0.119 -0.884 -1.023 1.358 sum 3.501 -1.962 7.591 8.587 Atomic orbital electron populations 1.21868 0.97856 1.00919 0.99352 1.19185 0.93823 0.96160 0.88299 0.92983 1.20976 1.30724 1.11417 0.89505 0.92056 1.24856 0.95275 0.94993 0.98834 1.69908 1.37145 1.23153 1.23129 0.86519 0.78576 0.79627 0.83177 1.19823 1.21172 1.21274 1.22169 0.94891 0.85405 0.87616 1.22975 0.75285 0.87905 0.80610 1.90791 1.43214 1.65787 1.34972 1.84674 1.77831 1.34153 1.36539 1.22077 0.93170 0.99143 1.02689 1.20274 0.98181 0.92847 0.99789 1.22453 0.98945 1.02686 1.05773 1.21786 0.92642 0.87202 0.98994 1.85895 1.61036 1.32493 1.43480 0.97050 0.89808 0.94515 0.93187 0.74755 0.88953 0.92064 0.91529 0.89091 0.86788 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.37 37.16 0.31 -3.31 16 2 C 0.04 1.08 1.18 -91.77 -0.11 0.98 16 3 H 0.05 1.37 6.12 -51.93 -0.32 1.05 16 4 C -0.49 -13.14 6.28 -34.44 -0.22 -13.35 16 5 H 0.06 1.67 5.78 -52.49 -0.30 1.36 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.58 11.39 55.43 0.63 -24.94 16 8 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.14 2.95 0.51 -91.51 -0.05 2.90 16 13 C 0.49 10.42 6.41 36.01 0.23 10.65 16 14 O -0.46 -11.11 13.72 -18.75 -0.26 -11.37 16 15 O -0.52 -8.86 13.17 -44.43 -0.59 -9.45 16 16 C -0.13 -2.54 4.74 -26.34 -0.12 -2.66 16 17 C -0.07 -1.31 5.58 -27.88 -0.16 -1.46 16 18 C -0.28 -4.63 9.45 -36.07 -0.34 -4.97 16 19 C 0.06 0.97 10.43 29.10 0.30 1.28 16 20 O -0.31 -6.34 9.00 -31.06 -0.28 -6.61 16 21 H 0.01 0.25 7.65 -51.93 -0.40 -0.15 16 22 H 0.08 2.30 6.27 -51.93 -0.33 1.98 16 23 H 0.04 0.95 6.41 -51.93 -0.33 0.62 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.40 4.66 9.10 45.56 0.41 5.08 16 26 H 0.09 1.84 6.56 -51.93 -0.34 1.49 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.82 7.16 -51.93 -0.37 1.45 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 252.16 15.07 3.80 3.80 Total: -1.00 -31.12 252.16 -4.75 -35.88 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -2.80 Total: 4.30 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.24 Total: -8.36 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.63 Total: -24.94 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -1.12 Total: -27.43 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.12 -4.75 -35.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691806618.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.084 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds