Wall clock time and date at job start Mon Mar 30 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 N 1.46493 * 109.47211 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00227 * 269.43199 * 4 3 2 6 6 H 1.07997 * 119.99756 * 326.02652 * 5 4 3 7 7 C 1.38813 * 120.00164 * 146.03120 * 5 4 3 8 8 N 1.31622 * 119.99865 * 336.63580 * 7 5 4 9 9 Si 1.86797 * 120.00200 * 156.63937 * 7 5 4 10 10 H 1.48497 * 109.47082 * 89.99563 * 9 7 5 11 11 H 1.48491 * 109.47375 * 210.00029 * 9 7 5 12 12 H 1.48501 * 109.46850 * 329.99985 * 9 7 5 13 13 C 1.46504 * 120.00172 * 89.43316 * 4 3 2 14 14 C 1.50699 * 109.47265 * 89.99576 * 13 4 3 15 15 C 1.35140 * 127.24497 * 89.70927 * 14 13 4 16 16 C 1.37815 * 114.75896 * 179.86839 * 15 14 13 17 17 N 1.30084 * 116.88095 * 0.44513 * 16 15 14 18 18 S 1.69606 * 107.14834 * 359.76234 * 17 16 15 19 19 H 1.08999 * 109.47009 * 60.00203 * 1 2 3 20 20 H 1.09004 * 109.46918 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47266 * 299.99990 * 1 2 3 22 22 H 1.08997 * 109.47351 * 239.99562 * 2 1 3 23 23 H 1.08999 * 109.47009 * 119.99797 * 2 1 3 24 24 H 1.08997 * 109.47295 * 59.99527 * 3 2 1 25 25 H 1.08999 * 109.46942 * 299.99838 * 3 2 1 26 26 H 0.96998 * 119.99847 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.47460 * 209.99945 * 13 4 3 28 28 H 1.08997 * 109.46738 * 329.99951 * 13 4 3 29 29 H 1.08002 * 122.62385 * 0.04107 * 15 14 13 30 30 H 1.08000 * 121.55929 * 180.20590 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.1892 1.4544 1.1868 6 1 3.7871 1.9856 2.0367 7 6 5.3996 0.7837 1.2966 8 7 5.6777 -0.2102 0.4798 9 14 6.6337 1.2918 2.6036 10 1 6.3793 0.5247 3.8494 11 1 8.0096 1.0106 2.1212 12 1 6.4929 2.7442 2.8792 13 6 4.2380 1.4297 -1.2677 14 6 4.4893 2.8460 -1.7170 15 6 5.5545 3.6221 -1.4181 16 6 5.5230 4.8837 -1.9719 17 7 4.4859 5.1813 -2.6985 18 16 3.4770 3.8181 -2.7121 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9563 0.8899 25 1 1.6767 1.9563 -0.8900 26 1 6.5236 -0.6786 0.5563 27 1 5.1904 0.9172 -1.1319 28 1 3.6492 0.9083 -2.0224 29 1 6.3684 3.2794 -0.7963 30 1 6.3202 5.5934 -1.8070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694513684.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:06 Heat of formation + Delta-G solvation = 33.508105 kcal Electronic energy + Delta-G solvation = -13673.359552 eV Core-core repulsion = 11402.048710 eV Total energy + Delta-G solvation = -2271.310842 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.60202 -37.95479 -34.68630 -33.33726 -31.69881 -28.17144 -27.34589 -25.01026 -23.49965 -21.84064 -20.50061 -19.13954 -18.09580 -16.87542 -16.33935 -16.02964 -15.76071 -15.15813 -14.56779 -14.43722 -14.00538 -13.85206 -13.36174 -13.00279 -12.77430 -12.70124 -12.52792 -12.25398 -12.03530 -11.81792 -11.61710 -11.39342 -11.28234 -10.58130 -10.25608 -9.54423 -8.71164 -7.90782 -5.44611 -0.07341 0.73297 1.09239 1.44914 1.49888 1.58160 1.72322 2.49971 3.20581 3.68093 3.96551 4.26429 4.34452 4.42831 4.58343 4.62075 4.71329 4.80533 4.94725 5.10691 5.16986 5.26989 5.29265 5.45314 5.51643 5.60342 5.73765 5.80051 6.40519 7.08070 7.76048 8.28090 9.08462 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.013338 C = 0.008318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.618087 B = 2098.719140 C = 3365.398491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.143 3.857 4 N -0.585 5.585 5 C -0.265 4.265 6 H 0.055 0.945 7 C -0.025 4.025 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.287 1.287 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.207 3.793 14 C -0.147 4.147 15 C -0.228 4.228 16 C 0.102 3.898 17 N -0.500 5.500 18 S 0.219 5.781 19 H 0.062 0.938 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.041 0.959 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.256 0.744 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.144 0.856 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 4.328 -3.810 6.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.018 3.982 4 N -0.304 5.304 5 C -0.395 4.395 6 H 0.072 0.928 7 C -0.223 4.223 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.078 3.922 14 C -0.279 4.279 15 C -0.262 4.262 16 C -0.096 4.096 17 N -0.321 5.321 18 S 0.369 5.631 19 H 0.081 0.919 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.162 0.838 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.936 5.047 -5.080 8.697 hybrid contribution 2.366 -0.575 1.911 3.095 sum -2.570 4.472 -3.169 6.054 Atomic orbital electron populations 1.21672 0.94178 1.01797 1.02004 1.21901 0.96148 0.98794 1.00173 1.21113 0.83087 0.94812 0.99189 1.43987 1.00850 1.84209 1.01336 1.19176 1.03739 1.25664 0.90926 0.92781 1.25607 1.01732 0.94996 0.99947 1.70048 1.23978 1.19796 1.41266 0.85588 0.78962 0.78452 0.79354 1.21341 1.21225 1.19881 1.19440 1.00373 0.86048 0.86368 1.27067 0.97425 1.04798 0.98656 1.21409 1.02523 0.94846 1.07468 1.23163 0.96997 0.96277 0.93114 1.76703 1.08840 1.20397 1.26131 1.83554 1.29309 1.03208 1.47018 0.91915 0.92365 0.92584 0.94041 0.94699 0.93886 0.93110 0.93498 0.88697 0.93255 0.83819 0.77285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.13 -4.86 6.26 30.59 0.19 -4.67 16 3 C 0.14 5.73 5.67 86.38 0.49 6.22 16 4 N -0.58 -27.50 2.43 -706.37 -1.72 -29.22 16 5 C -0.26 -13.75 9.48 84.03 0.80 -12.95 16 6 H 0.05 2.86 7.93 -2.91 -0.02 2.84 16 7 C -0.02 -1.28 4.94 84.86 0.42 -0.86 16 8 N -0.91 -49.32 11.34 21.65 0.25 -49.08 16 9 Si 0.95 42.18 29.61 68.60 2.03 44.22 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 C 0.21 9.23 5.87 85.63 0.50 9.73 16 14 C -0.15 -5.83 6.18 24.97 0.15 -5.68 16 15 C -0.23 -8.52 10.17 21.46 0.22 -8.30 16 16 C 0.10 3.28 11.27 84.85 0.96 4.24 16 17 N -0.50 -17.48 12.09 -62.60 -0.76 -18.23 16 18 S 0.22 7.65 23.72 -56.49 -1.34 6.31 16 19 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 20 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 25 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 26 H 0.26 13.45 8.31 -92.71 -0.77 12.67 16 27 H 0.10 4.83 5.33 -2.39 -0.01 4.81 16 28 H 0.05 2.08 8.07 -2.39 -0.02 2.06 16 29 H 0.14 5.51 8.06 -2.91 -0.02 5.48 16 30 H 0.21 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -56.84 272.84 4.01 -52.83 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.11 Total: 8.59 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 4.44 Total: -15.42 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.23 Total: -96.53 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -1.34 Total: 6.31 kcal Total: -56.84 4.01 -52.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694513684.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.334 kcal (2) G-P(sol) polarization free energy of solvation -56.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds