Wall clock time and date at job start Mon Mar 30 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46911 * 299.99912 * 3 2 1 6 6 H 1.48494 * 109.47255 * 60.00165 * 3 2 1 7 7 C 1.37882 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47275 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00204 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47065 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46877 * 180.02562 * 12 11 10 14 14 C 1.34949 * 126.03292 * 124.99906 * 13 12 11 15 15 C 1.35318 * 107.74247 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.04120 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47179 * 270.00215 * 16 15 14 18 18 C 1.39875 * 107.92186 * 0.02562 * 15 14 13 19 19 N 1.30839 * 108.20184 * 359.97438 * 18 15 14 20 20 H 0.97006 * 119.99735 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47280 * 59.99953 * 9 7 2 22 22 H 1.09005 * 109.46955 * 300.00039 * 9 7 2 23 23 H 1.09001 * 109.47410 * 59.99905 * 11 10 9 24 24 H 1.08995 * 109.47234 * 299.99855 * 11 10 9 25 25 H 1.08998 * 109.47319 * 60.00169 * 12 11 10 26 26 H 1.09005 * 109.47113 * 299.99871 * 12 11 10 27 27 H 1.07997 * 126.13040 * 0.03555 * 14 13 12 28 28 H 1.09003 * 109.47079 * 30.00095 * 16 15 14 29 29 H 1.09002 * 109.47262 * 149.99741 * 16 15 14 30 30 H 0.96697 * 114.00021 * 179.97438 * 17 16 15 31 31 H 1.08003 * 125.89835 * 179.73925 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 2.1795 -3.5853 0.0027 11 6 1.5650 -4.8754 0.0032 12 6 2.6480 -5.9562 0.0036 13 7 2.0178 -7.2788 0.0036 14 6 2.2417 -8.2648 -0.8902 15 6 1.4695 -9.3201 -0.5421 16 6 1.3987 -10.6425 -1.2614 17 8 0.3801 -10.5865 -2.2619 18 6 0.7487 -8.9667 0.6033 19 7 1.0767 -7.7434 0.9314 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6247 -2.5563 0.8920 23 1 0.9451 -4.9830 -0.8869 24 1 0.9446 -4.9819 0.8930 25 1 3.2681 -5.8488 0.8935 26 1 3.2681 -5.8495 -0.8865 27 1 2.9169 -8.2200 -1.7319 28 1 2.3593 -10.8519 -1.7321 29 1 1.1640 -11.4322 -0.5477 30 1 0.2786 -11.4054 -2.7661 31 1 0.0405 -9.5939 1.1245 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703570794.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:15 Heat of formation + Delta-G solvation = -22.554453 kcal Electronic energy + Delta-G solvation = -14664.225695 eV Core-core repulsion = 11947.730927 eV Total energy + Delta-G solvation = -2716.494768 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.22378 -37.09487 -36.73660 -33.69876 -32.62966 -30.83028 -29.19498 -27.02722 -25.20565 -23.15193 -22.31122 -20.73390 -20.15402 -17.56003 -17.01582 -16.48693 -15.67655 -15.25103 -14.83473 -14.73251 -14.29449 -14.22162 -13.72949 -13.26333 -12.80908 -12.58550 -12.17878 -11.83985 -11.21991 -10.90333 -10.84895 -10.82977 -10.57990 -10.15388 -10.09647 -9.40438 -9.17029 -8.93277 -8.54480 -8.27119 -6.14975 -4.17719 1.87133 2.48124 2.67772 3.27084 3.33435 3.39577 4.26155 4.38383 4.52715 4.78007 4.90891 5.01792 5.12859 5.18228 5.21500 5.40755 5.49831 5.62527 5.74332 5.99739 6.07927 6.16580 6.61188 6.99844 7.03563 7.35781 7.49795 7.70725 7.73817 8.07305 8.44355 8.94132 9.47149 10.96520 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.068111 B = 0.003953 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.992280 B = 7081.873027 C = 7128.965726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.197 3.803 10 O -0.396 6.396 11 C 0.055 3.945 12 C 0.135 3.865 13 N -0.360 5.360 14 C 0.081 3.919 15 C -0.258 4.258 16 C 0.159 3.841 17 O -0.572 6.572 18 C 0.059 3.941 19 N -0.290 5.290 20 H 0.265 0.735 21 H 0.007 0.993 22 H 0.008 0.992 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.174 0.826 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.375 0.625 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.961 -20.290 -2.668 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.123 3.877 10 O -0.315 6.315 11 C -0.023 4.023 12 C 0.014 3.986 13 N -0.142 5.142 14 C -0.067 4.067 15 C -0.269 4.269 16 C 0.081 3.919 17 O -0.377 6.377 18 C -0.128 4.128 19 N -0.111 5.111 20 H 0.074 0.926 21 H 0.025 0.975 22 H 0.026 0.974 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.122 0.878 27 H 0.192 0.808 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.221 0.779 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.840 -18.374 -1.594 18.839 hybrid contribution 0.178 -0.349 -0.813 0.902 sum 4.019 -18.723 -2.406 19.300 Atomic orbital electron populations 1.69979 1.06148 1.27200 1.50231 1.24970 0.95003 0.99525 0.95015 0.86247 0.79958 0.82406 0.77678 1.19440 1.20780 1.20772 1.21074 0.94125 0.89171 1.51231 0.91368 1.20265 0.88644 0.83021 0.95744 1.87768 1.35844 1.12522 1.95386 1.22318 0.94000 0.85185 1.00830 1.21611 0.95040 0.77032 1.04923 1.48640 1.32752 1.12136 1.20710 1.22394 1.00726 0.88402 0.95174 1.19739 1.06955 0.98488 1.01759 1.20144 0.90119 0.92774 0.88902 1.86633 1.58264 1.40838 1.51977 1.23773 0.99344 0.93360 0.96293 1.77449 1.07399 1.12347 1.13884 0.92588 0.97485 0.97380 0.94008 0.92850 0.88769 0.87806 0.80849 0.93344 0.93024 0.77894 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.31 9.43 -34.44 -0.32 -15.63 16 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 9 C 0.20 5.50 5.69 36.00 0.20 5.71 16 10 O -0.40 -9.56 10.33 -35.23 -0.36 -9.92 16 11 C 0.06 1.08 6.12 37.16 0.23 1.30 16 12 C 0.13 2.03 6.88 -4.04 -0.03 2.00 16 13 N -0.36 -5.39 3.68 -61.36 -0.23 -5.62 16 14 C 0.08 1.01 11.36 -17.22 -0.20 0.81 16 15 C -0.26 -3.13 5.73 -105.05 -0.60 -3.73 16 16 C 0.16 1.40 7.53 36.01 0.27 1.67 16 17 O -0.57 -5.68 13.64 -35.23 -0.48 -6.16 16 18 C 0.06 0.78 11.96 -17.36 -0.21 0.58 16 19 N -0.29 -4.71 12.42 30.63 0.38 -4.33 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 27 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.37 1.73 9.12 45.56 0.42 2.14 16 31 H 0.18 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 280.80 15.07 4.23 4.23 Total: -1.00 -34.90 280.80 -4.85 -39.75 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -3.35 Total: -2.65 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.75 Total: -5.76 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.89 Total: -36.27 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.84 Total: -16.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.90 -4.85 -39.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703570794.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.193 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds