Wall clock time and date at job start Mon Mar 30 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46911 * 299.99912 * 3 2 1 6 6 H 1.48494 * 109.47255 * 60.00165 * 3 2 1 7 7 C 1.37882 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47275 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00204 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47065 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46877 * 180.02562 * 12 11 10 14 14 C 1.34949 * 126.03292 * 124.99906 * 13 12 11 15 15 C 1.35318 * 107.74247 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.04120 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47179 * 270.00215 * 16 15 14 18 18 C 1.39875 * 107.92186 * 0.02562 * 15 14 13 19 19 N 1.30839 * 108.20184 * 359.97438 * 18 15 14 20 20 H 0.97006 * 119.99735 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47280 * 59.99953 * 9 7 2 22 22 H 1.09005 * 109.46955 * 300.00039 * 9 7 2 23 23 H 1.09001 * 109.47410 * 59.99905 * 11 10 9 24 24 H 1.08995 * 109.47234 * 299.99855 * 11 10 9 25 25 H 1.08998 * 109.47319 * 60.00169 * 12 11 10 26 26 H 1.09005 * 109.47113 * 299.99871 * 12 11 10 27 27 H 1.07997 * 126.13040 * 0.03555 * 14 13 12 28 28 H 1.09003 * 109.47079 * 30.00095 * 16 15 14 29 29 H 1.09002 * 109.47262 * 149.99741 * 16 15 14 30 30 H 0.96697 * 114.00021 * 179.97438 * 17 16 15 31 31 H 1.08003 * 125.89835 * 179.73925 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 2.1795 -3.5853 0.0027 11 6 1.5650 -4.8754 0.0032 12 6 2.6480 -5.9562 0.0036 13 7 2.0178 -7.2788 0.0036 14 6 2.2417 -8.2648 -0.8902 15 6 1.4695 -9.3201 -0.5421 16 6 1.3987 -10.6425 -1.2614 17 8 0.3801 -10.5865 -2.2619 18 6 0.7487 -8.9667 0.6033 19 7 1.0767 -7.7434 0.9314 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6247 -2.5563 0.8920 23 1 0.9451 -4.9830 -0.8869 24 1 0.9446 -4.9819 0.8930 25 1 3.2681 -5.8488 0.8935 26 1 3.2681 -5.8495 -0.8865 27 1 2.9169 -8.2200 -1.7319 28 1 2.3593 -10.8519 -1.7321 29 1 1.1640 -11.4322 -0.5477 30 1 0.2786 -11.4054 -2.7661 31 1 0.0405 -9.5939 1.1245 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703570794.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:15 Heat of formation + Delta-G solvation = -49.993972 kcal Electronic energy + Delta-G solvation = -14665.415562 eV Core-core repulsion = 11947.730927 eV Total energy + Delta-G solvation = -2717.684635 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.23114 -38.87341 -37.53233 -35.27045 -34.49987 -31.77363 -30.66790 -28.95511 -26.16218 -24.70027 -24.28050 -21.80086 -21.15603 -18.72218 -18.26122 -18.15953 -17.23069 -16.98411 -16.48191 -15.89357 -15.51347 -15.35166 -14.97373 -14.67936 -14.26206 -13.92533 -13.55999 -12.98041 -12.95444 -12.83415 -12.60243 -12.42840 -12.07435 -11.60959 -11.36183 -10.97593 -10.77294 -10.50794 -10.40902 -9.54041 -8.36738 -6.50851 0.86964 1.37977 1.41511 1.41879 1.56708 1.73501 2.32447 2.97436 2.97629 3.59066 3.85702 3.89696 3.99157 4.09124 4.18104 4.35428 4.44769 4.55677 4.57750 4.76608 4.79673 4.88532 5.05490 5.16070 5.48982 5.64688 5.86149 6.00983 6.36784 6.68171 6.70476 7.08905 7.21050 8.76139 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.068111 B = 0.003953 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.992280 B = 7081.873027 C = 7128.965726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.551 4.551 8 H 0.069 0.931 9 C 0.210 3.790 10 O -0.400 6.400 11 C 0.055 3.945 12 C 0.148 3.852 13 N -0.377 5.377 14 C 0.079 3.921 15 C -0.265 4.265 16 C 0.160 3.840 17 O -0.599 6.599 18 C 0.056 3.944 19 N -0.343 5.343 20 H 0.272 0.728 21 H -0.012 1.012 22 H -0.016 1.016 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.133 0.867 27 H 0.208 0.792 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.397 0.603 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 -20.915 -3.487 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.588 4.588 8 H 0.087 0.913 9 C 0.135 3.865 10 O -0.319 6.319 11 C -0.023 4.023 12 C 0.027 3.973 13 N -0.159 5.159 14 C -0.067 4.067 15 C -0.277 4.277 16 C 0.082 3.918 17 O -0.408 6.408 18 C -0.130 4.130 19 N -0.164 5.164 20 H 0.081 0.919 21 H 0.005 0.995 22 H 0.002 0.998 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.116 0.884 26 H 0.151 0.849 27 H 0.225 0.775 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.247 0.753 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.211 -19.058 -2.424 19.905 hybrid contribution -0.331 -0.312 -0.578 0.735 sum 4.880 -19.369 -3.002 20.199 Atomic orbital electron populations 1.70094 1.07987 1.28811 1.50218 1.26060 0.95994 1.03702 0.93667 0.85036 0.78714 0.76764 0.78269 1.18401 1.19565 1.19733 1.21416 0.94384 0.90345 1.52678 0.91296 1.19905 0.88604 0.84397 0.93626 1.87716 1.35345 1.13589 1.95274 1.22468 0.95696 0.84409 0.99736 1.21455 0.93336 0.75960 1.06592 1.48606 1.33452 1.12333 1.21553 1.23067 1.00868 0.87628 0.95181 1.20256 1.06071 0.99920 1.01434 1.20252 0.91091 0.91233 0.89204 1.86553 1.58713 1.42937 1.52581 1.24327 0.99195 0.92742 0.96735 1.77395 1.09195 1.14110 1.15721 0.91918 0.99463 0.99788 0.94501 0.94542 0.88426 0.84885 0.77493 0.91024 0.91143 0.75324 0.77898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.99 44.32 29.54 68.60 2.03 46.34 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -33.06 9.43 25.60 0.24 -32.81 16 8 H 0.07 4.02 7.81 -2.91 -0.02 4.00 16 9 C 0.21 12.14 5.69 71.24 0.41 12.55 16 10 O -0.40 -19.79 10.33 -148.98 -1.54 -21.33 16 11 C 0.05 2.21 6.12 71.98 0.44 2.65 16 12 C 0.15 4.37 6.88 86.38 0.59 4.96 16 13 N -0.38 -11.02 3.68 -348.04 -1.28 -12.30 16 14 C 0.08 1.80 11.36 83.54 0.95 2.75 16 15 C -0.27 -5.93 5.73 -20.14 -0.12 -6.04 16 16 C 0.16 2.35 7.53 71.24 0.54 2.89 16 17 O -0.60 -10.42 13.64 -148.98 -2.03 -12.46 16 18 C 0.06 1.45 11.96 85.24 1.02 2.47 16 19 N -0.34 -11.21 12.42 -57.02 -0.71 -11.92 16 20 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 21 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 22 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.13 3.12 8.07 -2.38 -0.02 3.10 16 27 H 0.21 3.04 8.06 -2.91 -0.02 3.01 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.40 2.64 9.12 -74.06 -0.68 1.96 16 31 H 0.20 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -76.22 280.80 1.74 -74.48 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 0.45 Total: 3.66 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 4.53 Total: -9.88 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.70 Total: -80.81 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -3.57 Total: -33.79 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -76.22 1.74 -74.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703570794.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.488 kcal (2) G-P(sol) polarization free energy of solvation -76.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds