Wall clock time and date at job start Mon Mar 30 2020 03:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00314 * 2 1 4 4 H 1.48497 * 109.46889 * 239.99611 * 3 2 1 5 5 H 1.48500 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46794 * 119.99568 * 3 2 1 7 7 C 1.38958 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00021 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99743 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99838 * 180.02562 * 10 9 7 13 13 C 1.54431 * 111.80382 * 273.98464 * 12 10 9 14 14 N 1.48473 * 105.00279 * 261.22569 * 13 12 10 15 15 C 1.48576 * 104.20813 * 320.78769 * 14 13 12 16 16 C 1.54180 * 104.47825 * 40.21503 * 15 14 13 17 17 H 1.09000 * 112.48702 * 98.08360 * 16 15 14 18 18 C 1.54584 * 109.04440 * 223.61498 * 16 15 14 19 19 C 1.54974 * 102.12344 * 133.21179 * 18 16 15 20 20 O 1.43701 * 112.58928 * 36.52497 * 12 10 9 21 21 H 0.96996 * 119.99749 * 0.02562 * 1 2 3 22 22 H 0.97009 * 120.00000 * 0.02562 * 9 7 2 23 23 H 1.09002 * 110.35466 * 142.31047 * 13 12 10 24 24 H 1.08997 * 110.34981 * 20.13279 * 13 12 10 25 25 H 1.00897 * 111.00219 * 80.33737 * 14 13 12 26 26 H 1.08993 * 110.43512 * 158.96391 * 15 14 13 27 27 H 1.09004 * 110.43075 * 281.46742 * 15 14 13 28 28 H 1.09007 * 110.87066 * 251.37038 * 18 16 15 29 29 H 1.08994 * 110.87214 * 14.84612 * 18 16 15 30 30 H 1.09005 * 110.62261 * 81.02342 * 19 18 16 31 31 H 1.09003 * 110.62218 * 204.02302 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2101 -3.5579 0.0031 12 6 1.2436 -4.8629 0.0032 13 6 0.8699 -5.3089 1.4338 14 7 1.9047 -6.3056 1.8082 15 6 2.1292 -7.0837 0.5626 16 6 2.1025 -6.0284 -0.5612 17 1 3.1021 -5.7163 -0.8638 18 6 1.2689 -6.5721 -1.7440 19 6 0.3562 -5.3658 -2.0807 20 8 0.0446 -4.8083 -0.7869 21 1 -0.4849 0.8400 -0.0004 22 1 0.3532 -2.3906 0.0016 23 1 -0.1189 -5.7676 1.4418 24 1 0.8982 -4.4588 2.1153 25 1 2.7536 -5.8503 2.1081 26 1 3.0984 -7.5814 0.5943 27 1 1.3309 -7.8120 0.4197 28 1 1.9107 -6.8214 -2.5892 29 1 0.6790 -7.4362 -1.4386 30 1 0.8904 -4.6393 -2.6931 31 1 -0.5514 -5.6997 -2.5835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705046612.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:39 Heat of formation + Delta-G solvation = -76.381450 kcal Electronic energy + Delta-G solvation = -16378.159878 eV Core-core repulsion = 13659.330997 eV Total energy + Delta-G solvation = -2718.828882 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.45266 -37.37700 -35.83982 -33.97390 -32.00447 -31.07190 -28.56108 -27.15712 -25.05296 -22.52921 -21.87234 -20.55200 -18.83705 -18.00585 -16.77405 -16.20990 -15.63783 -15.11317 -14.71319 -14.07888 -13.72816 -13.63269 -13.11111 -12.74001 -12.46891 -12.13037 -11.73538 -11.58533 -11.12877 -11.06312 -10.83573 -10.80492 -10.54475 -10.46122 -10.23965 -9.87311 -9.56299 -8.74494 -8.13070 -8.02130 -6.46493 -3.87925 3.14880 3.22626 3.26697 3.70608 3.99258 4.12148 4.43675 4.65357 4.81981 5.00521 5.18529 5.23057 5.36036 5.48412 5.55648 5.70453 5.79332 5.91836 5.92558 6.05746 6.07958 6.23139 6.36161 6.39028 6.69915 7.19062 7.47471 7.49361 7.99927 8.55074 9.09975 9.49952 9.99501 10.69826 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.041505 B = 0.008174 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.452254 B = 3424.833944 C = 3614.076828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.308 4.308 8 H 0.103 0.897 9 N -0.538 5.538 10 C 0.431 3.569 11 O -0.597 6.597 12 C 0.067 3.933 13 C 0.053 3.947 14 N -0.663 5.663 15 C 0.050 3.950 16 C -0.138 4.138 17 H 0.108 0.892 18 C -0.147 4.147 19 C 0.047 3.953 20 O -0.359 6.359 21 H 0.274 0.726 22 H 0.399 0.601 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.343 0.657 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 -10.700 -1.710 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.437 4.437 8 H 0.121 0.879 9 N -0.172 5.172 10 C 0.216 3.784 11 O -0.484 6.484 12 C 0.022 3.978 13 C -0.077 4.077 14 N -0.290 5.290 15 C -0.080 4.080 16 C -0.158 4.158 17 H 0.126 0.874 18 C -0.185 4.185 19 C -0.029 4.029 20 O -0.277 6.277 21 H 0.084 0.916 22 H 0.234 0.766 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.159 0.841 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.407 -10.921 -1.245 10.999 hybrid contribution 0.470 1.524 -0.818 1.792 sum 0.064 -9.398 -2.063 9.621 Atomic orbital electron populations 1.69632 1.05992 1.28510 1.48940 1.25337 0.95638 0.99881 0.96804 0.85904 0.78817 0.80277 0.79142 1.19830 1.20796 1.19754 1.19716 0.93387 0.82302 1.48308 0.87921 1.41879 1.09801 1.04358 1.61188 1.19695 0.87864 0.84734 0.86156 1.90504 1.13421 1.86766 1.57712 1.23767 0.85404 0.94641 0.93956 1.23090 0.97193 0.95162 0.92287 1.63356 1.13096 1.23209 1.29315 1.23081 1.01694 0.95728 0.87492 1.23729 1.00909 0.94652 0.96559 0.87413 1.23198 0.98318 0.98663 0.98282 1.23562 0.99055 0.93669 0.86649 1.88832 1.30842 1.83786 1.24237 0.91582 0.76647 0.88926 0.90013 0.84075 0.90758 0.90115 0.90468 0.90380 0.92158 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 13.05 55.50 0.72 -23.89 16 2 C 0.03 0.72 5.50 -17.47 -0.10 0.62 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.31 -8.72 9.68 -14.93 -0.14 -8.86 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.54 -14.28 5.23 -10.96 -0.06 -14.34 16 10 C 0.43 10.56 6.79 -10.99 -0.07 10.48 16 11 O -0.60 -16.22 15.40 5.55 0.09 -16.14 16 12 C 0.07 1.30 1.12 -89.75 -0.10 1.20 16 13 C 0.05 0.93 6.78 -2.20 -0.01 0.92 16 14 N -0.66 -10.39 7.62 -109.80 -0.84 -11.22 16 15 C 0.05 0.69 7.01 -2.28 -0.02 0.68 16 16 C -0.14 -2.24 3.54 -87.90 -0.31 -2.55 16 17 H 0.11 1.97 7.14 -51.93 -0.37 1.60 16 18 C -0.15 -1.95 6.69 -24.86 -0.17 -2.11 16 19 C 0.05 0.73 7.72 38.20 0.29 1.03 16 20 O -0.36 -6.82 10.33 -35.23 -0.36 -7.18 16 21 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 22 H 0.40 10.55 7.53 -40.82 -0.31 10.25 16 23 H 0.09 1.52 7.99 -51.93 -0.41 1.10 16 24 H 0.08 1.52 7.87 -51.93 -0.41 1.11 16 25 H 0.34 5.53 8.92 -39.29 -0.35 5.18 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.01 7.19 -51.93 -0.37 0.64 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.90 7.19 -51.93 -0.37 0.53 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 259.20 15.07 3.91 3.91 Total: -1.00 -30.55 259.20 -5.99 -36.55 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -3.80 Total: 14.87 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.63 Total: 1.40 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.17 Total: -49.45 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.28 Total: -23.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.55 -5.99 -36.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705046612.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.835 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds