Wall clock time and date at job start Mon Mar 30 2020 03:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00314 * 2 1 4 4 H 1.48497 * 109.46889 * 239.99611 * 3 2 1 5 5 H 1.48500 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46794 * 119.99568 * 3 2 1 7 7 C 1.38958 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00021 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99743 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99838 * 180.02562 * 10 9 7 13 13 C 1.54431 * 111.80382 * 273.98464 * 12 10 9 14 14 N 1.48473 * 105.00279 * 261.22569 * 13 12 10 15 15 C 1.48576 * 104.20813 * 320.78769 * 14 13 12 16 16 C 1.54180 * 104.47825 * 40.21503 * 15 14 13 17 17 H 1.09000 * 112.48702 * 98.08360 * 16 15 14 18 18 C 1.54584 * 109.04440 * 223.61498 * 16 15 14 19 19 C 1.54974 * 102.12344 * 133.21179 * 18 16 15 20 20 O 1.43701 * 112.58928 * 36.52497 * 12 10 9 21 21 H 0.96996 * 119.99749 * 0.02562 * 1 2 3 22 22 H 0.97009 * 120.00000 * 0.02562 * 9 7 2 23 23 H 1.09002 * 110.35466 * 142.31047 * 13 12 10 24 24 H 1.08997 * 110.34981 * 20.13279 * 13 12 10 25 25 H 1.00897 * 111.00219 * 80.33737 * 14 13 12 26 26 H 1.08993 * 110.43512 * 158.96391 * 15 14 13 27 27 H 1.09004 * 110.43075 * 281.46742 * 15 14 13 28 28 H 1.09007 * 110.87066 * 251.37038 * 18 16 15 29 29 H 1.08994 * 110.87214 * 14.84612 * 18 16 15 30 30 H 1.09005 * 110.62261 * 81.02342 * 19 18 16 31 31 H 1.09003 * 110.62218 * 204.02302 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2101 -3.5579 0.0031 12 6 1.2436 -4.8629 0.0032 13 6 0.8699 -5.3089 1.4338 14 7 1.9047 -6.3056 1.8082 15 6 2.1292 -7.0837 0.5626 16 6 2.1025 -6.0284 -0.5612 17 1 3.1021 -5.7163 -0.8638 18 6 1.2689 -6.5721 -1.7440 19 6 0.3562 -5.3658 -2.0807 20 8 0.0446 -4.8083 -0.7869 21 1 -0.4849 0.8400 -0.0004 22 1 0.3532 -2.3906 0.0016 23 1 -0.1189 -5.7676 1.4418 24 1 0.8982 -4.4588 2.1153 25 1 2.7536 -5.8503 2.1081 26 1 3.0984 -7.5814 0.5943 27 1 1.3309 -7.8120 0.4197 28 1 1.9107 -6.8214 -2.5892 29 1 0.6790 -7.4362 -1.4386 30 1 0.8904 -4.6393 -2.6931 31 1 -0.5514 -5.6997 -2.5835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705046612.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:39 Heat of formation + Delta-G solvation = -101.574081 kcal Electronic energy + Delta-G solvation = -16379.252313 eV Core-core repulsion = 13659.330997 eV Total energy + Delta-G solvation = -2719.921316 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.92143 -39.27618 -37.17472 -36.03650 -33.57878 -32.85000 -30.04065 -28.38885 -27.06418 -24.05489 -23.06692 -22.00981 -20.56829 -19.96786 -18.39746 -17.71820 -17.10842 -16.68407 -16.38044 -15.87322 -15.31052 -15.09190 -14.93446 -14.29100 -13.72161 -13.61496 -13.40008 -12.99005 -12.93706 -12.55727 -12.48589 -12.21462 -12.07229 -12.00389 -11.75040 -11.59247 -11.29937 -10.35622 -10.12613 -9.69105 -8.54245 -6.05753 1.32850 1.37036 1.49265 1.83678 2.23212 2.65665 2.96397 3.05575 3.22593 3.51306 3.75140 3.96780 4.11509 4.18949 4.26997 4.30821 4.50653 4.58772 4.77745 4.82251 4.85858 4.94693 5.01369 5.14926 5.31338 5.44726 5.75582 5.94031 6.17787 6.47638 6.99712 7.43718 7.95492 8.62193 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.041505 B = 0.008174 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.452254 B = 3424.833944 C = 3614.076828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.345 4.345 8 H 0.082 0.918 9 N -0.552 5.552 10 C 0.428 3.572 11 O -0.629 6.629 12 C 0.066 3.934 13 C 0.059 3.941 14 N -0.658 5.658 15 C 0.055 3.945 16 C -0.140 4.140 17 H 0.081 0.919 18 C -0.131 4.131 19 C 0.035 3.965 20 O -0.374 6.374 21 H 0.281 0.719 22 H 0.397 0.603 23 H 0.110 0.890 24 H 0.060 0.940 25 H 0.338 0.662 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 -12.038 -2.054 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.474 4.474 8 H 0.100 0.900 9 N -0.186 5.186 10 C 0.215 3.785 11 O -0.518 6.518 12 C 0.021 3.979 13 C -0.072 4.072 14 N -0.284 5.284 15 C -0.074 4.074 16 C -0.161 4.161 17 H 0.100 0.900 18 C -0.169 4.169 19 C -0.041 4.041 20 O -0.293 6.293 21 H 0.091 0.909 22 H 0.231 0.769 23 H 0.128 0.872 24 H 0.079 0.921 25 H 0.153 0.847 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.055 0.945 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.861 -12.284 -1.594 12.417 hybrid contribution 0.606 1.901 -0.745 2.130 sum -0.256 -10.383 -2.339 10.646 Atomic orbital electron populations 1.69703 1.07107 1.29760 1.48765 1.26203 0.96570 1.02798 0.95544 0.84925 0.77790 0.76066 0.79156 1.19493 1.19111 1.19344 1.19741 0.92827 0.83953 1.50917 0.89983 1.41973 1.09564 1.04793 1.62244 1.20746 0.87893 0.86115 0.83783 1.90463 1.15152 1.87712 1.58481 1.23679 0.86000 0.92431 0.95824 1.23037 0.98578 0.95081 0.90476 1.63410 1.12476 1.22357 1.30178 1.23229 1.03922 0.95003 0.85217 1.23724 0.99416 0.94130 0.98782 0.90013 1.23207 0.97781 0.98287 0.97601 1.23855 1.01070 0.94063 0.85152 1.88822 1.30421 1.84366 1.25661 0.90948 0.76931 0.87165 0.92095 0.84675 0.88714 0.87551 0.88406 0.87324 0.94496 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.97 13.05 21.67 0.28 -50.69 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.35 -20.29 9.68 84.04 0.81 -19.48 16 8 H 0.08 5.06 7.16 -2.91 -0.02 5.03 16 9 N -0.55 -30.43 5.23 -306.98 -1.61 -32.04 16 10 C 0.43 21.68 6.79 87.66 0.60 22.28 16 11 O -0.63 -35.53 15.40 -3.06 -0.05 -35.58 16 12 C 0.07 2.53 1.12 -10.23 -0.01 2.51 16 13 C 0.06 2.03 6.78 86.49 0.59 2.61 16 14 N -0.66 -19.52 7.62 -501.30 -3.82 -23.34 16 15 C 0.06 1.37 7.01 86.38 0.61 1.97 16 16 C -0.14 -4.32 3.54 -9.03 -0.03 -4.35 16 17 H 0.08 2.96 7.14 -2.39 -0.02 2.95 16 18 C -0.13 -3.05 6.69 31.81 0.21 -2.84 16 19 C 0.03 1.01 7.72 72.66 0.56 1.57 16 20 O -0.37 -13.92 10.33 -148.98 -1.54 -15.46 16 21 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 22 H 0.40 21.80 7.53 -92.70 -0.70 21.10 16 23 H 0.11 3.40 7.99 -2.39 -0.02 3.38 16 24 H 0.06 2.31 7.87 -2.39 -0.02 2.29 16 25 H 0.34 10.67 8.92 -89.70 -0.80 9.87 16 26 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.11 2.14 7.19 -2.38 -0.02 2.13 16 28 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.11 1.93 7.19 -2.39 -0.02 1.91 16 30 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -67.72 259.20 -1.24 -68.96 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -0.34 Total: 38.54 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 3.80 Total: 4.19 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -5.14 Total: -106.07 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -1.59 Total: -51.03 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -67.72 -1.24 -68.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705046612.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.610 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds