Wall clock time and date at job start Mon Mar 30 2020 02:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46905 * 89.99545 * 8 6 4 10 10 H 1.48498 * 109.47176 * 209.99501 * 8 6 4 11 11 H 1.48497 * 109.46811 * 330.00276 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 C 1.37801 * 121.56067 * 94.73914 * 15 14 12 17 17 C 1.35140 * 114.76069 * 179.80701 * 16 15 14 18 18 S 1.72049 * 105.50091 * 0.41186 * 17 16 15 19 19 N 1.30086 * 121.55732 * 275.02088 * 15 14 12 20 20 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 21 21 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 22 22 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 23 23 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 24 24 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 25 25 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 26 26 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 27 27 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 28 28 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 29 29 H 1.08009 * 122.62259 * 0.02562 * 16 15 14 30 30 H 1.08009 * 127.24661 * 180.17896 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 6 3.0044 -0.7111 4.3590 17 6 3.1417 -1.5593 5.4021 18 16 1.7530 -2.5739 5.3556 19 7 1.0577 -1.8456 3.9909 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 0.7090 1.1614 -3.4844 24 1 3.8163 -1.3720 2.0501 25 1 3.8069 -1.2915 0.2719 26 1 3.9192 0.2044 1.2301 27 1 2.0518 0.9347 2.5280 28 1 0.4722 0.1325 2.3564 29 1 3.7344 0.0507 4.1281 30 1 3.9543 -1.5954 6.1127 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705782048.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:34 Heat of formation + Delta-G solvation = 50.743672 kcal Electronic energy + Delta-G solvation = -13585.230291 eV Core-core repulsion = 11314.666839 eV Total energy + Delta-G solvation = -2270.563452 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13905 -36.47906 -32.76635 -31.09024 -29.32759 -27.99076 -25.08304 -24.15583 -22.26338 -19.73196 -19.00299 -17.96762 -16.30937 -15.59025 -14.97856 -14.39139 -14.09766 -13.52503 -13.24747 -13.06229 -12.46547 -12.14431 -11.88112 -11.23540 -11.11056 -10.98891 -10.73452 -10.61822 -10.25024 -10.13275 -10.05321 -9.83531 -9.53166 -8.90050 -8.50721 -8.37937 -7.23075 -6.01804 -4.06251 0.89852 1.69914 2.05560 2.65503 3.31369 3.37651 3.40735 4.40959 4.72766 5.11797 5.28153 5.33002 5.41988 5.64858 5.80690 5.95561 6.16093 6.23701 6.34936 6.74337 6.84609 6.97385 7.06862 7.13899 7.49142 7.69104 7.81923 8.17734 8.29561 8.55294 8.99442 9.58566 11.05060 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.052862 B = 0.006315 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.553594 B = 4432.770603 C = 4564.171654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.528 5.528 13 C 0.034 3.966 14 C 0.114 3.886 15 C 0.137 3.863 16 C -0.189 4.189 17 C -0.210 4.210 18 S 0.212 5.788 19 N -0.430 5.430 20 H 0.009 0.991 21 H 0.086 0.914 22 H 0.036 0.964 23 H 0.261 0.739 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.153 0.847 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 -1.985 13.592 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.254 5.254 13 C -0.114 4.114 14 C -0.019 4.019 15 C -0.043 4.043 16 C -0.225 4.225 17 C -0.358 4.358 18 S 0.365 5.635 19 N -0.251 5.251 20 H 0.028 0.972 21 H 0.105 0.895 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.171 0.829 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.361 -3.895 13.842 14.572 hybrid contribution 2.000 1.709 -1.230 2.904 sum 4.361 -2.186 12.612 13.522 Atomic orbital electron populations 1.21873 0.97551 0.99935 0.99903 1.19284 0.92485 0.92015 0.85418 0.98128 1.21132 1.31133 1.12295 0.89644 0.91813 1.24923 0.95201 0.95062 0.99005 1.69890 1.36904 1.22975 1.23457 0.86506 0.79218 0.79297 0.82430 1.20637 1.21322 1.19955 1.62111 1.09486 1.52515 1.01258 1.22290 0.88557 0.98862 1.01705 1.20868 1.02627 0.91819 0.86613 1.21710 0.90801 0.94270 0.97478 1.21352 1.00132 1.04195 0.96814 1.26459 1.05148 1.01163 1.03029 1.83974 1.11846 1.38081 1.29629 1.76887 1.26627 1.12822 1.08734 0.97215 0.89529 0.94472 0.92950 0.93942 0.90209 0.96841 0.93626 0.88654 0.82948 0.80364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.76 37.16 0.33 -3.00 16 2 C 0.21 5.39 2.06 -68.87 -0.14 5.25 16 3 H 0.00 0.03 8.14 -51.92 -0.42 -0.39 16 4 C -0.50 -13.77 7.88 -34.44 -0.27 -14.04 16 5 H 0.06 1.75 6.41 -52.49 -0.34 1.41 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.53 -11.56 4.61 -237.73 -1.10 -12.65 16 13 C 0.03 0.68 8.96 60.07 0.54 1.22 16 14 C 0.11 2.12 5.18 -4.98 -0.03 2.09 16 15 C 0.14 2.31 5.55 -83.49 -0.46 1.84 16 16 C -0.19 -2.57 8.67 -40.84 -0.35 -2.93 16 17 C -0.21 -2.43 11.42 29.63 0.34 -2.09 16 18 S 0.21 2.84 23.72 -107.50 -2.55 0.30 16 19 N -0.43 -7.67 12.05 32.02 0.39 -7.28 16 20 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 21 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 22 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.04 0.74 6.43 -51.93 -0.33 0.41 16 25 H 0.08 1.69 6.10 -51.93 -0.32 1.38 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.10 1.85 5.83 -51.93 -0.30 1.55 16 29 H 0.15 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 260.31 15.07 3.92 3.92 Total: -1.00 -29.43 260.31 -7.47 -36.90 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -3.59 Total: -2.66 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.15 Total: -10.12 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.08 Total: -44.64 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.55 Total: 0.30 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.43 -7.47 -36.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705782048.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.644 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds