Wall clock time and date at job start Mon Mar 30 2020 02:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46905 * 89.99545 * 8 6 4 10 10 H 1.48498 * 109.47176 * 209.99501 * 8 6 4 11 11 H 1.48497 * 109.46811 * 330.00276 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 C 1.37801 * 121.56067 * 94.73914 * 15 14 12 17 17 C 1.35140 * 114.76069 * 179.80701 * 16 15 14 18 18 S 1.72049 * 105.50091 * 0.41186 * 17 16 15 19 19 N 1.30086 * 121.55732 * 275.02088 * 15 14 12 20 20 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 21 21 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 22 22 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 23 23 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 24 24 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 25 25 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 26 26 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 27 27 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 28 28 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 29 29 H 1.08009 * 122.62259 * 0.02562 * 16 15 14 30 30 H 1.08009 * 127.24661 * 180.17896 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 6 3.0044 -0.7111 4.3590 17 6 3.1417 -1.5593 5.4021 18 16 1.7530 -2.5739 5.3556 19 7 1.0577 -1.8456 3.9909 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 0.7090 1.1614 -3.4844 24 1 3.8163 -1.3720 2.0501 25 1 3.8069 -1.2915 0.2719 26 1 3.9192 0.2044 1.2301 27 1 2.0518 0.9347 2.5280 28 1 0.4722 0.1325 2.3564 29 1 3.7344 0.0507 4.1281 30 1 3.9543 -1.5954 6.1127 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705782048.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:34 Heat of formation + Delta-G solvation = 30.999288 kcal Electronic energy + Delta-G solvation = -13586.086472 eV Core-core repulsion = 11314.666839 eV Total energy + Delta-G solvation = -2271.419633 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39205 -38.14073 -34.75264 -32.19066 -31.25262 -29.53784 -27.00036 -25.75478 -23.67321 -21.44959 -20.32880 -19.01794 -18.33699 -17.24137 -16.35128 -16.05379 -15.74708 -15.05909 -14.57380 -14.40803 -14.13339 -13.76061 -13.46029 -12.95863 -12.82400 -12.58557 -12.51825 -12.18971 -12.10044 -11.96303 -11.80586 -11.27549 -10.92885 -10.63521 -10.50033 -9.55768 -8.95214 -8.11178 -6.22712 -0.15201 0.68911 0.92505 1.42496 1.44083 1.49979 1.54349 2.43178 3.17191 3.41946 3.78928 4.13158 4.23576 4.50881 4.52655 4.63662 4.72959 4.77731 4.89573 5.01616 5.04584 5.10396 5.25432 5.48218 5.71352 5.74439 5.82511 6.24545 6.36857 6.67689 6.90604 7.46025 8.94894 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.052862 B = 0.006315 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.553594 B = 4432.770603 C = 4564.171654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.219 3.781 3 H -0.025 1.025 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.542 5.542 13 C 0.041 3.959 14 C 0.116 3.884 15 C 0.126 3.874 16 C -0.207 4.207 17 C -0.179 4.179 18 S 0.237 5.763 19 N -0.488 5.488 20 H 0.030 0.970 21 H 0.063 0.937 22 H 0.024 0.976 23 H 0.262 0.738 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.021 0.979 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.173 0.827 30 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.732 -2.639 15.016 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.112 3.888 3 H -0.008 1.008 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.192 1.192 12 N -0.267 5.267 13 C -0.107 4.107 14 C -0.017 4.017 15 C -0.052 4.052 16 C -0.242 4.242 17 C -0.327 4.327 18 S 0.390 5.610 19 N -0.309 5.309 20 H 0.049 0.951 21 H 0.082 0.918 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.190 0.810 30 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.912 -4.545 15.279 16.414 hybrid contribution 1.526 1.873 -1.521 2.855 sum 5.438 -2.672 13.758 15.033 Atomic orbital electron populations 1.21692 0.97586 0.98983 0.99810 1.19053 0.92441 0.90622 0.86665 1.00800 1.21403 1.31238 1.12291 0.90891 0.92350 1.25690 0.95362 0.95745 1.01820 1.70007 1.37689 1.24087 1.24112 0.85529 0.78817 0.78202 0.78911 1.20472 1.20746 1.19231 1.61986 1.10828 1.52630 1.01285 1.22225 0.87313 0.99450 1.01709 1.20784 1.01706 0.92917 0.86267 1.21597 0.92116 0.94213 0.97311 1.21445 0.99673 1.05675 0.97375 1.26973 1.04811 0.98630 1.02273 1.83850 1.12403 1.37441 1.27309 1.76680 1.28761 1.14067 1.11426 0.95068 0.91820 0.95654 0.92865 0.91489 0.92263 0.96059 0.92223 0.90230 0.80975 0.75984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.22 8.76 71.98 0.63 -5.59 16 2 C 0.22 11.27 2.06 44.17 0.09 11.36 16 3 H -0.03 -1.42 8.14 -2.38 -0.02 -1.44 16 4 C -0.52 -28.86 7.88 25.60 0.20 -28.66 16 5 H 0.06 3.24 6.41 -2.91 -0.02 3.22 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -52.96 11.32 21.45 0.24 -52.72 16 8 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 N -0.54 -23.76 4.61 -906.03 -4.18 -27.94 16 13 C 0.04 1.59 8.96 127.69 1.14 2.74 16 14 C 0.12 4.28 5.18 85.56 0.44 4.73 16 15 C 0.13 4.08 5.55 42.71 0.24 4.32 16 16 C -0.21 -4.99 8.67 21.45 0.19 -4.81 16 17 C -0.18 -3.38 11.42 67.11 0.77 -2.61 16 18 S 0.24 5.78 23.72 -56.49 -1.34 4.44 16 19 N -0.49 -16.93 12.05 -52.60 -0.63 -17.56 16 20 H 0.03 1.39 6.20 -2.39 -0.01 1.38 16 21 H 0.06 3.51 6.07 -2.39 -0.01 3.49 16 22 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 24 H 0.07 2.23 6.43 -2.38 -0.02 2.21 16 25 H 0.06 2.51 6.10 -2.39 -0.01 2.49 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 28 H 0.08 3.13 5.83 -2.39 -0.01 3.12 16 29 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.22 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -63.99 260.31 1.40 -62.59 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 1.13 Total: 2.63 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 4.15 Total: -17.38 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -4.57 Total: -98.22 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -1.34 Total: 4.44 kcal Total: -63.99 1.40 -62.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705782048.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.593 kcal (2) G-P(sol) polarization free energy of solvation -63.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds