Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.50704 * 109.47165 * 180.02562 * 14 13 2 16 16 C 1.37807 * 121.56040 * 94.73594 * 15 14 13 17 17 C 1.35142 * 114.75828 * 179.80883 * 16 15 14 18 18 S 1.72050 * 105.50397 * 0.41329 * 17 16 15 19 19 N 1.30082 * 121.55766 * 275.02848 * 15 14 13 20 20 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 21 21 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 23 23 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 24 24 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.00894 * 110.99680 * 38.95122 * 13 2 1 27 27 H 1.08999 * 109.47253 * 299.99875 * 14 13 2 28 28 H 1.09005 * 109.47412 * 59.99805 * 14 13 2 29 29 H 1.07998 * 122.62126 * 0.03044 * 16 15 14 30 30 H 1.08002 * 127.24313 * 180.17882 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 2.5884 -0.5214 3.5558 16 6 3.9224 -0.5135 3.9014 17 6 4.2236 -1.2223 5.0119 18 16 2.7309 -1.8848 5.5535 19 7 1.7872 -1.2057 4.3186 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.6055 -0.2619 -2.1370 24 1 1.7517 -1.7715 -1.2055 25 1 6.0246 -1.4984 -3.1541 26 1 1.4495 -1.4978 1.4100 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6164 2.5525 29 1 4.6684 0.0204 3.3314 30 1 5.1970 -1.3496 5.4621 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705795685.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = 35.694656 kcal Electronic energy + Delta-G solvation = -13223.632831 eV Core-core repulsion = 10952.416805 eV Total energy + Delta-G solvation = -2271.216026 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.09326 -36.53635 -32.67745 -31.38642 -30.56191 -27.80919 -26.27421 -23.02306 -22.22579 -19.98824 -19.18246 -18.00720 -16.56050 -15.57390 -15.23022 -14.56536 -14.05159 -13.69346 -13.36161 -13.12082 -12.45415 -12.36120 -12.20602 -11.84782 -11.65646 -11.33485 -11.17517 -10.74058 -10.38217 -10.13654 -9.80772 -9.62143 -9.58805 -9.03844 -8.54042 -8.40443 -7.69374 -5.89576 -3.83145 0.81744 1.63790 1.93531 2.58692 3.38207 3.45326 3.47792 4.56357 4.64465 4.90307 5.19514 5.44484 5.46827 5.49510 5.59676 5.76075 5.84228 5.87491 5.93503 6.06868 6.32531 6.48860 6.77798 6.85057 7.17917 7.27624 7.74014 7.89176 8.02897 8.73315 9.21114 9.73870 11.24528 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.032415 B = 0.006614 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.581194 B = 4232.450357 C = 4732.375212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.099 3.901 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.488 4.488 6 H 0.077 0.923 7 C 0.060 3.940 8 N -0.910 5.910 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.268 1.268 12 H -0.291 1.291 13 N -0.656 5.656 14 C 0.128 3.872 15 C 0.133 3.867 16 C -0.173 4.173 17 C -0.207 4.207 18 S 0.221 5.779 19 N -0.460 5.460 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.042 0.958 23 H 0.018 0.982 24 H 0.012 0.988 25 H 0.259 0.741 26 H 0.336 0.664 27 H 0.093 0.907 28 H 0.041 0.959 29 H 0.162 0.838 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 1.368 13.497 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.010 4.010 3 H 0.092 0.908 4 C -0.042 4.042 5 C -0.527 4.527 6 H 0.095 0.905 7 C -0.139 4.139 8 N -0.550 5.550 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.217 1.217 13 N -0.287 5.287 14 C -0.006 4.006 15 C -0.046 4.046 16 C -0.208 4.208 17 C -0.354 4.354 18 S 0.374 5.626 19 N -0.281 5.281 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.153 0.847 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.179 0.821 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.690 0.323 14.346 15.832 hybrid contribution 0.101 0.356 -1.565 1.608 sum -6.588 0.678 12.781 14.395 Atomic orbital electron populations 1.22599 0.99221 1.01416 1.01057 1.21594 0.89912 0.98399 0.91103 0.90827 1.19618 0.97904 0.95177 0.91516 1.21031 0.89480 1.33719 1.08438 0.90517 1.25009 0.94685 0.96332 0.97894 1.69910 1.06457 1.46423 1.32231 0.86871 0.80364 0.80638 0.81853 1.20629 1.19311 1.21695 1.60532 1.58062 1.08378 1.01721 1.20672 0.99536 0.94410 0.85964 1.21617 0.90774 0.95664 0.96535 1.21357 0.96866 1.04336 0.98256 1.26527 1.05045 1.02783 1.01094 1.83881 0.95049 1.51175 1.32464 1.76692 1.27028 1.16965 1.07423 0.92288 0.92983 0.93860 0.96342 0.97021 0.93116 0.84651 0.88862 0.94071 0.82082 0.80087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.16 37.16 0.34 -2.55 16 2 C 0.10 1.89 2.53 -67.71 -0.17 1.72 16 3 H 0.07 1.41 7.80 -51.93 -0.40 1.00 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -13.77 9.39 -34.44 -0.32 -14.09 16 6 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 9 Si 0.87 22.05 27.47 -169.99 -4.67 17.38 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.46 6.54 56.52 0.37 -6.10 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 N -0.66 -12.14 5.95 -107.99 -0.64 -12.79 16 14 C 0.13 1.99 5.88 -4.98 -0.03 1.97 16 15 C 0.13 2.04 6.23 -83.49 -0.52 1.52 16 16 C -0.17 -2.43 9.95 -40.84 -0.41 -2.84 16 17 C -0.21 -2.45 11.42 29.63 0.34 -2.11 16 18 S 0.22 2.79 23.72 -107.50 -2.55 0.24 16 19 N -0.46 -7.17 12.05 32.03 0.39 -6.79 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 21 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 22 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 23 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.34 6.09 8.46 -39.29 -0.33 5.76 16 27 H 0.09 1.39 8.00 -51.93 -0.42 0.98 16 28 H 0.04 0.60 7.44 -51.93 -0.39 0.21 16 29 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 270.26 15.07 4.07 4.07 Total: -1.00 -31.39 270.26 -7.57 -38.97 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.97 Total: 1.40 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.97 Total: -14.92 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.52 Total: -47.13 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.55 Total: 0.24 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.39 -7.57 -38.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705795685.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.660 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds