Wall clock time and date at job start Mon Mar 30 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.50704 * 109.47165 * 180.02562 * 14 13 2 16 16 C 1.37807 * 121.56040 * 94.73594 * 15 14 13 17 17 C 1.35142 * 114.75828 * 179.80883 * 16 15 14 18 18 S 1.72050 * 105.50397 * 0.41329 * 17 16 15 19 19 N 1.30082 * 121.55766 * 275.02848 * 15 14 13 20 20 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 21 21 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 23 23 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 24 24 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.00894 * 110.99680 * 38.95122 * 13 2 1 27 27 H 1.08999 * 109.47253 * 299.99875 * 14 13 2 28 28 H 1.09005 * 109.47412 * 59.99805 * 14 13 2 29 29 H 1.07998 * 122.62126 * 0.03044 * 16 15 14 30 30 H 1.08002 * 127.24313 * 180.17882 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 2.5884 -0.5214 3.5558 16 6 3.9224 -0.5135 3.9014 17 6 4.2236 -1.2223 5.0119 18 16 2.7309 -1.8848 5.5535 19 7 1.7872 -1.2057 4.3186 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.6055 -0.2619 -2.1370 24 1 1.7517 -1.7715 -1.2055 25 1 6.0246 -1.4984 -3.1541 26 1 1.4495 -1.4978 1.4100 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6164 2.5525 29 1 4.6684 0.0204 3.3314 30 1 5.1970 -1.3496 5.4621 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705795685.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:38 Heat of formation + Delta-G solvation = 13.762737 kcal Electronic energy + Delta-G solvation = -13224.583870 eV Core-core repulsion = 10952.416805 eV Total energy + Delta-G solvation = -2272.167066 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21860 -37.99681 -34.72752 -32.77810 -31.86143 -29.58587 -27.51801 -24.69365 -23.59246 -21.51920 -20.41490 -19.03517 -18.73683 -16.87384 -16.52679 -16.19857 -15.67879 -14.93662 -14.89153 -14.35293 -14.14748 -13.83256 -13.55890 -13.31297 -13.27277 -12.77155 -12.54365 -12.25606 -11.92133 -11.67406 -11.53410 -11.34429 -11.13686 -10.68395 -10.64403 -9.58768 -9.08274 -8.14512 -6.12422 -0.23159 0.63401 0.86587 1.39845 1.40537 1.46823 1.51541 2.44848 3.19162 3.46212 3.72122 4.11101 4.19333 4.28260 4.47732 4.49325 4.56912 4.67816 4.77427 4.94293 5.00047 5.15648 5.21570 5.30638 5.51633 5.73853 5.79019 6.26434 6.49016 6.61398 6.95153 7.47957 9.02697 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.032415 B = 0.006614 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.581194 B = 4232.450357 C = 4732.375212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 H 0.067 0.933 4 C -0.004 4.004 5 C -0.487 4.487 6 H 0.039 0.961 7 C -0.005 4.005 8 N -0.959 5.959 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.246 1.246 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.134 3.866 15 C 0.121 3.879 16 C -0.203 4.203 17 C -0.188 4.188 18 S 0.256 5.744 19 N -0.492 5.492 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.024 0.976 24 H 0.011 0.989 25 H 0.260 0.740 26 H 0.336 0.664 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.160 0.840 30 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 0.842 14.042 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.006 4.006 3 H 0.086 0.914 4 C -0.041 4.041 5 C -0.525 4.525 6 H 0.057 0.943 7 C -0.199 4.199 8 N -0.601 5.601 9 Si 0.768 3.232 10 H -0.202 1.202 11 H -0.170 1.170 12 H -0.216 1.216 13 N -0.308 5.308 14 C 0.000 4.000 15 C -0.057 4.057 16 C -0.237 4.237 17 C -0.336 4.336 18 S 0.409 5.591 19 N -0.315 5.315 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.154 0.846 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.177 0.823 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.146 -0.187 14.901 16.983 hybrid contribution 0.627 0.521 -1.579 1.778 sum -7.519 0.334 13.322 15.301 Atomic orbital electron populations 1.22445 0.96072 1.02128 1.02471 1.21396 0.92336 0.97255 0.89652 0.91438 1.19591 0.94661 0.95747 0.94149 1.21323 0.92025 1.32216 1.06971 0.94284 1.25923 0.95505 0.97703 1.00787 1.70074 1.08399 1.48251 1.33421 0.85775 0.79842 0.79208 0.78422 1.20216 1.16983 1.21569 1.60396 1.58548 1.09229 1.02650 1.20604 1.00210 0.93895 0.85284 1.21610 0.91330 0.96112 0.96600 1.21447 0.96567 1.06037 0.99674 1.26973 1.06327 1.00571 0.99735 1.83732 0.94679 1.49959 1.30761 1.76535 1.28509 1.17798 1.08652 0.91370 0.92599 0.91962 0.95792 0.97071 0.93164 0.84571 0.89039 0.92821 0.82253 0.76698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.98 9.16 71.98 0.66 -4.32 16 2 C 0.10 3.84 2.53 44.91 0.11 3.95 16 3 H 0.07 2.56 7.80 -2.39 -0.02 2.55 16 4 C 0.00 -0.17 3.72 29.85 0.11 -0.06 16 5 C -0.49 -27.86 9.39 25.60 0.24 -27.62 16 6 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 7 C 0.00 -0.27 5.47 84.65 0.46 0.19 16 8 N -0.96 -61.12 13.96 21.45 0.30 -60.82 16 9 Si 0.94 45.26 27.47 68.60 1.88 47.14 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 N -0.68 -24.86 5.95 -495.57 -2.95 -27.81 16 14 C 0.13 4.12 5.88 85.56 0.50 4.62 16 15 C 0.12 3.68 6.23 42.72 0.27 3.94 16 16 C -0.20 -5.56 9.95 21.45 0.21 -5.35 16 17 C -0.19 -4.08 11.42 67.11 0.77 -3.31 16 18 S 0.26 5.95 23.72 -56.49 -1.34 4.61 16 19 N -0.49 -14.86 12.05 -52.58 -0.63 -15.50 16 20 H 0.07 1.84 8.14 -2.38 -0.02 1.83 16 21 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 22 H 0.06 1.57 7.45 -2.39 -0.02 1.56 16 23 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 24 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 25 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.34 11.99 8.46 -89.70 -0.76 11.23 16 27 H 0.09 2.78 8.00 -2.39 -0.02 2.76 16 28 H 0.05 1.50 7.44 -2.38 -0.02 1.48 16 29 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.22 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -67.74 270.26 0.91 -66.83 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.32 Total: 13.50 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 3.34 Total: -27.96 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -3.28 Total: -104.12 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Atomic # 16 Polarization: 5.95 SS G_CDS: -1.34 Total: 4.61 kcal Total: -67.74 0.91 -66.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705795685.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.588 kcal (2) G-P(sol) polarization free energy of solvation -67.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds