Wall clock time and date at job start Mon Mar 30 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99678 * 2 1 4 4 H 1.48506 * 109.47020 * 240.00293 * 3 2 1 5 5 H 1.48497 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00873 * 3 2 1 7 7 C 1.37874 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99868 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00236 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47064 * 185.08963 * 11 10 9 13 13 C 1.50705 * 113.00229 * 76.98438 * 12 11 10 14 14 O 1.20818 * 120.00271 * 353.34285 * 13 12 11 15 15 O 1.34237 * 119.99422 * 173.33857 * 13 12 11 16 16 C 1.53668 * 113.82806 * 305.13351 * 12 11 10 17 17 C 1.51402 * 87.41091 * 220.14994 * 16 12 11 18 18 O 1.20764 * 136.31848 * 206.00432 * 17 16 12 19 19 C 1.51405 * 87.36648 * 26.25809 * 17 16 12 20 20 H 0.97002 * 120.00213 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47161 * 60.00297 * 9 7 2 22 22 H 1.08995 * 109.47603 * 300.00229 * 9 7 2 23 23 H 1.08996 * 109.47046 * 60.00275 * 10 9 7 24 24 H 1.08994 * 109.47430 * 299.99920 * 10 9 7 25 25 H 1.08998 * 109.47095 * 65.09116 * 11 10 9 26 26 H 1.08997 * 109.46700 * 305.09176 * 11 10 9 27 27 H 0.96704 * 116.99363 * 180.02562 * 15 13 12 28 28 H 1.08995 * 113.56854 * 105.51512 * 16 12 11 29 29 H 1.09010 * 113.63003 * 334.78880 * 16 12 11 30 30 H 1.09004 * 113.55740 * 88.37200 * 19 17 16 31 31 H 1.09000 * 113.56241 * 219.10392 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4697 -6.1472 0.1268 13 6 2.9833 -6.3309 1.5317 14 8 2.7013 -5.5267 2.3880 15 8 3.7540 -7.3883 1.8315 16 6 3.5737 -6.1423 -0.9420 17 6 3.4130 -7.6460 -1.0166 18 8 4.1087 -8.5846 -1.3221 19 6 1.9886 -7.4471 -0.5435 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 0.9242 -5.0851 -0.9334 26 1 0.7868 -5.0066 0.8394 27 1 4.0592 -7.4638 2.7460 28 1 4.5456 -5.8263 -0.5632 29 1 3.2905 -5.6278 -1.8604 30 1 1.2791 -7.2823 -1.3545 31 1 1.6544 -8.2061 0.1638 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706603219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:35 Heat of formation + Delta-G solvation = -117.749014 kcal Electronic energy + Delta-G solvation = -15493.654508 eV Core-core repulsion = 12740.739043 eV Total energy + Delta-G solvation = -2752.915465 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.25593 -39.26432 -37.01200 -36.14746 -33.93206 -31.80630 -27.98369 -26.42927 -25.28191 -23.40435 -20.69325 -19.95742 -19.23229 -17.92238 -16.54752 -16.27785 -15.83705 -15.40574 -15.20266 -15.10358 -14.43203 -13.99793 -13.32127 -12.79586 -12.42773 -12.41368 -12.19714 -11.72395 -11.53718 -11.19759 -11.13938 -10.79749 -10.52190 -10.47254 -10.31150 -9.66169 -9.50957 -9.25908 -9.02300 -8.31205 -5.96921 -3.98765 1.77392 2.10274 2.89482 3.35121 3.39384 3.42057 3.68324 4.14195 4.48394 4.56400 4.67983 4.88128 5.31255 5.35700 5.39016 5.47058 5.59791 5.69447 5.89899 6.03781 6.33163 6.43723 6.73899 6.88577 7.16619 7.34243 7.70618 7.86219 7.87939 8.03756 8.46649 9.08073 9.64934 11.14475 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.042279 B = 0.005746 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.104224 B = 4871.479599 C = 5017.458177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.111 4.111 11 C -0.089 4.089 12 C -0.070 4.070 13 C 0.493 3.507 14 O -0.485 6.485 15 O -0.521 6.521 16 C -0.170 4.170 17 C 0.369 3.631 18 O -0.423 6.423 19 C -0.175 4.175 20 H 0.260 0.740 21 H 0.015 0.985 22 H 0.016 0.984 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.411 0.589 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 -14.766 -0.573 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.149 4.149 11 C -0.127 4.127 12 C -0.072 4.072 13 C 0.334 3.666 14 O -0.370 6.370 15 O -0.334 6.334 16 C -0.208 4.208 17 C 0.242 3.758 18 O -0.294 6.294 19 C -0.212 4.212 20 H 0.070 0.930 21 H 0.033 0.967 22 H 0.035 0.965 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.270 0.730 28 H 0.114 0.886 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.499 -14.886 -0.892 15.576 hybrid contribution 0.577 1.085 0.825 1.480 sum 5.076 -13.801 -0.067 14.705 Atomic orbital electron populations 1.69952 1.06028 1.26628 1.50998 1.25013 0.94834 0.99180 0.95414 0.86681 0.79607 0.83261 0.78585 1.20280 1.21300 1.20288 1.21222 0.92963 0.91179 1.50395 0.92859 1.19068 0.93968 0.91254 0.97160 1.21679 0.99309 0.93308 1.00590 1.21548 0.95991 0.92204 1.02907 1.21346 0.99013 0.98957 0.87852 1.22709 0.75285 0.77968 0.90669 1.90788 1.54354 1.42595 1.49221 1.84516 1.63947 1.47154 1.37822 1.24066 1.00029 0.96582 1.00101 1.25380 0.90157 0.90656 0.69558 1.90409 1.58621 1.42913 1.37443 1.24191 0.98832 0.96358 1.01866 0.93004 0.96676 0.96516 0.92740 0.93331 0.90414 0.90733 0.72999 0.88556 0.84500 0.84915 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.79 9.11 -34.45 -0.31 -15.10 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.20 4.71 -26.73 -0.13 -2.32 16 11 C -0.09 -1.36 4.44 -26.73 -0.12 -1.48 16 12 C -0.07 -0.88 0.99 -154.82 -0.15 -1.03 16 13 C 0.49 6.79 7.38 36.01 0.27 7.06 16 14 O -0.48 -8.51 15.87 -18.74 -0.30 -8.81 16 15 O -0.52 -5.61 12.27 -39.28 -0.48 -6.09 16 16 C -0.17 -1.89 6.11 -27.41 -0.17 -2.06 16 17 C 0.37 4.29 8.15 -28.35 -0.23 4.06 16 18 O -0.42 -6.17 17.99 6.00 0.11 -6.06 16 19 C -0.17 -1.69 7.02 -27.25 -0.19 -1.89 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 1.15 7.05 -51.93 -0.37 0.79 16 24 H 0.05 0.89 7.36 -51.93 -0.38 0.51 16 25 H 0.08 1.03 7.82 -51.93 -0.41 0.62 16 26 H 0.07 1.24 7.83 -51.93 -0.41 0.83 16 27 H 0.41 2.68 9.10 45.56 0.41 3.09 16 28 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 29 H 0.14 1.31 7.88 -51.92 -0.41 0.90 16 30 H 0.13 0.99 7.88 -51.93 -0.41 0.58 16 31 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 LS Contribution 272.09 15.07 4.10 4.10 Total: -1.00 -34.37 272.09 -5.32 -39.69 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -3.19 Total: -2.49 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -1.27 Total: -10.80 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.67 Total: -20.97 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -34.37 -5.32 -39.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706603219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.063 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds