Wall clock time and date at job start Mon Mar 30 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99678 * 2 1 4 4 H 1.48506 * 109.47020 * 240.00293 * 3 2 1 5 5 H 1.48497 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00873 * 3 2 1 7 7 C 1.37874 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99868 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00236 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47064 * 185.08963 * 11 10 9 13 13 C 1.50705 * 113.00229 * 76.98438 * 12 11 10 14 14 O 1.20818 * 120.00271 * 353.34285 * 13 12 11 15 15 O 1.34237 * 119.99422 * 173.33857 * 13 12 11 16 16 C 1.53668 * 113.82806 * 305.13351 * 12 11 10 17 17 C 1.51402 * 87.41091 * 220.14994 * 16 12 11 18 18 O 1.20764 * 136.31848 * 206.00432 * 17 16 12 19 19 C 1.51405 * 87.36648 * 26.25809 * 17 16 12 20 20 H 0.97002 * 120.00213 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47161 * 60.00297 * 9 7 2 22 22 H 1.08995 * 109.47603 * 300.00229 * 9 7 2 23 23 H 1.08996 * 109.47046 * 60.00275 * 10 9 7 24 24 H 1.08994 * 109.47430 * 299.99920 * 10 9 7 25 25 H 1.08998 * 109.47095 * 65.09116 * 11 10 9 26 26 H 1.08997 * 109.46700 * 305.09176 * 11 10 9 27 27 H 0.96704 * 116.99363 * 180.02562 * 15 13 12 28 28 H 1.08995 * 113.56854 * 105.51512 * 16 12 11 29 29 H 1.09010 * 113.63003 * 334.78880 * 16 12 11 30 30 H 1.09004 * 113.55740 * 88.37200 * 19 17 16 31 31 H 1.09000 * 113.56241 * 219.10392 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4697 -6.1472 0.1268 13 6 2.9833 -6.3309 1.5317 14 8 2.7013 -5.5267 2.3880 15 8 3.7540 -7.3883 1.8315 16 6 3.5737 -6.1423 -0.9420 17 6 3.4130 -7.6460 -1.0166 18 8 4.1087 -8.5846 -1.3221 19 6 1.9886 -7.4471 -0.5435 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 0.9242 -5.0851 -0.9334 26 1 0.7868 -5.0066 0.8394 27 1 4.0592 -7.4638 2.7460 28 1 4.5456 -5.8263 -0.5632 29 1 3.2905 -5.6278 -1.8604 30 1 1.2791 -7.2823 -1.3545 31 1 1.6544 -8.2061 0.1638 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706603219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:35 Heat of formation + Delta-G solvation = -141.333025 kcal Electronic energy + Delta-G solvation = -15494.677188 eV Core-core repulsion = 12740.739043 eV Total energy + Delta-G solvation = -2753.938145 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.26919 -40.28356 -38.07592 -37.20990 -35.79344 -33.66718 -29.64619 -27.31780 -26.63785 -25.02925 -22.24940 -21.24935 -20.18613 -18.95883 -18.43960 -17.44851 -16.91248 -16.62520 -16.35591 -16.17385 -16.08211 -15.43933 -14.56162 -14.32202 -14.02926 -13.47968 -13.26873 -13.11299 -12.87183 -12.81154 -12.62782 -12.52873 -12.26239 -11.79572 -11.61277 -11.30101 -11.23545 -10.93938 -10.51597 -10.42002 -8.17318 -6.27575 0.88586 1.04609 1.40287 1.43252 1.51018 1.96605 2.42587 2.79231 3.15749 3.20327 3.68363 3.71267 3.87558 4.33725 4.52970 4.55126 4.62574 4.64711 4.83029 4.88080 4.97320 5.18796 5.30114 5.33356 5.51838 5.60324 5.85024 5.92597 6.30278 6.45740 6.89892 6.92698 7.41185 8.94186 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.042279 B = 0.005746 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.104224 B = 4871.479599 C = 5017.458177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.098 4.098 11 C -0.080 4.080 12 C -0.077 4.077 13 C 0.498 3.502 14 O -0.533 6.533 15 O -0.512 6.512 16 C -0.168 4.168 17 C 0.375 3.625 18 O -0.456 6.456 19 C -0.155 4.155 20 H 0.263 0.737 21 H 0.002 0.998 22 H -0.018 1.018 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.430 0.570 28 H 0.094 0.906 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -15.328 -1.533 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.136 4.136 11 C -0.118 4.118 12 C -0.079 4.079 13 C 0.340 3.660 14 O -0.421 6.421 15 O -0.327 6.327 16 C -0.205 4.205 17 C 0.251 3.749 18 O -0.329 6.329 19 C -0.192 4.192 20 H 0.072 0.928 21 H 0.020 0.980 22 H 0.000 1.000 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.123 0.877 26 H 0.074 0.926 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.176 0.824 30 H 0.183 0.817 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.274 -15.477 -1.847 16.455 hybrid contribution 0.348 1.235 1.164 1.732 sum 5.622 -14.242 -0.684 15.327 Atomic orbital electron populations 1.70082 1.07690 1.27714 1.51850 1.25946 0.95761 1.03204 0.94882 0.85570 0.78361 0.78437 0.79102 1.18833 1.20760 1.19744 1.21714 0.93450 0.92732 1.50274 0.92538 1.18998 0.94500 0.93034 0.94764 1.21458 0.98115 0.93593 1.00420 1.21368 0.95940 0.90904 1.03549 1.21198 0.99380 0.99510 0.87766 1.22966 0.74624 0.77588 0.90779 1.90782 1.56282 1.44366 1.50705 1.84475 1.62994 1.45656 1.39551 1.24170 0.99392 0.96712 1.00246 1.25507 0.90767 0.90269 0.68393 1.90411 1.59574 1.43735 1.39140 1.24199 0.98191 0.94396 1.02429 0.92832 0.97959 0.99962 0.94693 0.91561 0.87733 0.92625 0.70822 0.88783 0.82425 0.81740 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -31.27 9.11 25.60 0.23 -31.03 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -3.86 4.71 30.60 0.14 -3.71 16 11 C -0.08 -2.35 4.44 30.60 0.14 -2.21 16 12 C -0.08 -1.76 0.99 -52.38 -0.05 -1.81 16 13 C 0.50 13.17 7.38 71.24 0.53 13.70 16 14 O -0.53 -18.89 15.87 21.99 0.35 -18.54 16 15 O -0.51 -10.13 12.27 -51.48 -0.63 -10.76 16 16 C -0.17 -3.28 6.11 30.15 0.18 -3.09 16 17 C 0.37 7.68 8.15 29.54 0.24 7.92 16 18 O -0.46 -12.37 17.99 -1.46 -0.03 -12.39 16 19 C -0.15 -2.46 7.02 30.26 0.21 -2.25 16 20 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 21 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 22 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 23 H 0.03 1.49 7.05 -2.39 -0.02 1.47 16 24 H 0.07 2.33 7.36 -2.39 -0.02 2.32 16 25 H 0.10 2.48 7.82 -2.39 -0.02 2.46 16 26 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 27 H 0.43 4.92 9.10 -74.05 -0.67 4.25 16 28 H 0.09 1.91 8.10 -2.39 -0.02 1.90 16 29 H 0.16 2.45 7.88 -2.38 -0.02 2.43 16 30 H 0.17 1.64 7.88 -2.38 -0.02 1.63 16 31 H 0.11 1.55 8.11 -2.39 -0.02 1.53 16 Total: -1.00 -75.53 272.09 4.70 -70.82 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 0.47 Total: 1.69 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 2.23 Total: -20.64 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.28 Total: -56.85 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -0.31 Total: -41.69 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -75.53 4.70 -70.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706603219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.510 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds