Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47056 * 2 1 4 4 C 1.50701 * 109.46958 * 239.99942 * 2 1 3 5 5 H 1.07998 * 120.00099 * 240.00531 * 4 2 1 6 6 C 1.37880 * 119.99755 * 60.00311 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47008 * 60.00170 * 8 6 4 10 10 H 1.48496 * 109.46873 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47134 * 299.99873 * 8 6 4 12 12 N 1.46906 * 109.47053 * 120.00330 * 2 1 3 13 13 C 1.46903 * 110.99770 * 274.99984 * 12 2 1 14 14 H 1.08999 * 109.47349 * 34.99747 * 13 12 2 15 15 C 1.53003 * 109.46738 * 274.99957 * 13 12 2 16 16 C 1.50699 * 109.46828 * 155.00026 * 13 12 2 17 17 C 1.35141 * 127.24467 * 219.69979 * 16 13 12 18 18 C 1.37808 * 114.75927 * 179.86845 * 17 16 13 19 19 N 1.30087 * 116.87901 * 0.45172 * 18 17 16 20 20 S 1.69603 * 107.15408 * 359.75709 * 19 18 17 21 21 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47006 * 299.99884 * 1 2 3 23 23 H 1.09002 * 109.47097 * 59.99865 * 1 2 3 24 24 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99789 * 151.04350 * 12 2 1 26 26 H 1.08999 * 109.47030 * 299.99986 * 15 13 12 27 27 H 1.08993 * 109.47304 * 59.99809 * 15 13 12 28 28 H 1.09000 * 109.46817 * 180.02562 * 15 13 12 29 29 H 1.08001 * 122.62183 * 0.04757 * 17 16 13 30 30 H 1.07996 * 121.56077 * 180.21511 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4191 -5.2204 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9329 2.2907 15 6 3.4112 0.9807 2.3224 16 6 1.9786 -0.5678 3.6259 17 6 1.2960 -0.2308 4.7425 18 6 1.3744 -1.1499 5.7663 19 7 2.0910 -2.2134 5.5483 20 16 2.7103 -2.0855 3.9746 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7088 1.1614 -3.4843 25 1 2.9173 -1.1206 1.0287 26 1 4.2360 0.2704 2.3786 27 1 3.4863 1.5522 1.3973 28 1 3.4579 1.6594 3.1740 29 1 0.7308 0.6858 4.8249 30 1 0.8677 -0.9927 6.7070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716055864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = 32.429115 kcal Electronic energy + Delta-G solvation = -13410.002993 eV Core-core repulsion = 11138.645363 eV Total energy + Delta-G solvation = -2271.357631 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.63710 -36.72612 -33.49645 -31.21456 -29.38098 -27.04712 -25.31438 -24.81314 -21.93251 -19.97292 -19.50660 -17.38197 -16.52400 -15.41219 -14.97589 -14.25067 -14.05450 -13.61691 -13.48895 -12.80722 -12.53769 -12.39150 -11.68812 -11.60667 -11.33882 -10.93900 -10.80353 -10.53022 -10.45104 -10.21252 -10.17196 -10.04502 -9.16161 -8.91823 -8.53745 -8.45137 -7.46021 -6.08319 -4.15051 1.01621 1.82450 2.20814 2.71694 3.28495 3.33194 3.36102 4.35160 4.68673 5.20468 5.28383 5.32192 5.40604 5.49104 5.62182 5.88465 6.05324 6.16470 6.22686 6.42005 6.79586 6.81560 7.06846 7.13812 7.39679 7.71256 7.79830 8.17939 8.25276 8.53154 8.93455 9.51193 10.97969 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.047625 B = 0.006547 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.790910 B = 4275.829416 C = 4450.805635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.214 3.786 3 H 0.006 0.994 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.681 5.681 13 C 0.149 3.851 14 H 0.095 0.905 15 C -0.174 4.174 16 C -0.120 4.120 17 C -0.231 4.231 18 C 0.089 3.911 19 N -0.485 5.485 20 S 0.271 5.729 21 H 0.032 0.968 22 H 0.004 0.996 23 H 0.082 0.918 24 H 0.262 0.738 25 H 0.335 0.665 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.151 0.849 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 0.154 11.428 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.024 0.976 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.313 5.313 13 C 0.036 3.964 14 H 0.113 0.887 15 C -0.233 4.233 16 C -0.251 4.251 17 C -0.266 4.266 18 C -0.108 4.108 19 N -0.306 5.306 20 S 0.423 5.577 21 H 0.051 0.949 22 H 0.023 0.977 23 H 0.101 0.899 24 H 0.072 0.928 25 H 0.153 0.847 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.168 0.832 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.617 -1.889 11.406 11.854 hybrid contribution -0.142 1.765 -0.823 1.953 sum 2.475 -0.124 10.583 10.869 Atomic orbital electron populations 1.21751 0.97787 0.99521 0.99396 1.19123 0.92578 0.92527 0.85031 0.97611 1.21191 1.31748 1.12658 0.90336 0.92168 1.24900 0.94948 0.94958 0.99045 1.69876 1.36419 1.22821 1.23691 0.86571 0.79092 0.79825 0.81994 1.20147 1.21289 1.20288 1.60862 1.32390 1.32164 1.05856 1.19971 0.97889 0.92068 0.86503 0.88732 1.22497 0.97288 1.00904 1.02645 1.25833 0.99282 1.00413 0.99594 1.21239 1.07620 1.04376 0.93351 1.22692 0.97354 0.90024 1.00744 1.76692 1.18687 1.24671 1.10589 1.84047 1.48486 1.16320 1.08881 0.94881 0.97729 0.89940 0.92795 0.84720 0.92504 0.90946 0.92641 0.83153 0.80735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.17 37.16 0.34 -2.71 16 2 C 0.21 5.16 2.41 -68.86 -0.17 4.99 16 3 H 0.01 0.16 7.11 -51.93 -0.37 -0.21 16 4 C -0.52 -13.80 8.59 -34.44 -0.30 -14.09 16 5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.72 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.68 -13.77 5.88 -102.16 -0.60 -14.37 16 13 C 0.15 2.51 2.89 -68.86 -0.20 2.31 16 14 H 0.09 1.66 7.11 -51.93 -0.37 1.29 16 15 C -0.17 -2.61 9.13 37.16 0.34 -2.27 16 16 C -0.12 -1.87 5.52 -35.41 -0.20 -2.06 16 17 C -0.23 -3.13 10.17 -40.84 -0.42 -3.55 16 18 C 0.09 1.16 11.27 -18.45 -0.21 0.95 16 19 N -0.49 -7.47 12.09 28.87 0.35 -7.12 16 20 S 0.27 4.19 23.54 -107.50 -2.53 1.66 16 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.00 0.08 7.43 -51.93 -0.39 -0.30 16 23 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.33 6.64 7.96 -39.29 -0.31 6.32 16 26 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 27 H 0.07 1.18 7.43 -51.93 -0.39 0.80 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.18 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 267.71 15.07 4.03 4.03 Total: -1.00 -28.13 267.71 -7.82 -35.95 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.79 Total: 2.93 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -0.89 Total: -14.80 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.38 Total: -45.59 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -2.53 Total: 1.66 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.13 -7.82 -35.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716055864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.380 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds