Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47056 * 2 1 4 4 C 1.50701 * 109.46958 * 239.99942 * 2 1 3 5 5 H 1.07998 * 120.00099 * 240.00531 * 4 2 1 6 6 C 1.37880 * 119.99755 * 60.00311 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47008 * 60.00170 * 8 6 4 10 10 H 1.48496 * 109.46873 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47134 * 299.99873 * 8 6 4 12 12 N 1.46906 * 109.47053 * 120.00330 * 2 1 3 13 13 C 1.46903 * 110.99770 * 274.99984 * 12 2 1 14 14 H 1.08999 * 109.47349 * 34.99747 * 13 12 2 15 15 C 1.53003 * 109.46738 * 274.99957 * 13 12 2 16 16 C 1.50699 * 109.46828 * 155.00026 * 13 12 2 17 17 C 1.35141 * 127.24467 * 219.69979 * 16 13 12 18 18 C 1.37808 * 114.75927 * 179.86845 * 17 16 13 19 19 N 1.30087 * 116.87901 * 0.45172 * 18 17 16 20 20 S 1.69603 * 107.15408 * 359.75709 * 19 18 17 21 21 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47006 * 299.99884 * 1 2 3 23 23 H 1.09002 * 109.47097 * 59.99865 * 1 2 3 24 24 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99789 * 151.04350 * 12 2 1 26 26 H 1.08999 * 109.47030 * 299.99986 * 15 13 12 27 27 H 1.08993 * 109.47304 * 59.99809 * 15 13 12 28 28 H 1.09000 * 109.46817 * 180.02562 * 15 13 12 29 29 H 1.08001 * 122.62183 * 0.04757 * 17 16 13 30 30 H 1.07996 * 121.56077 * 180.21511 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4191 -5.2204 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9329 2.2907 15 6 3.4112 0.9807 2.3224 16 6 1.9786 -0.5678 3.6259 17 6 1.2960 -0.2308 4.7425 18 6 1.3744 -1.1499 5.7663 19 7 2.0910 -2.2134 5.5483 20 16 2.7103 -2.0855 3.9746 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7088 1.1614 -3.4843 25 1 2.9173 -1.1206 1.0287 26 1 4.2360 0.2704 2.3786 27 1 3.4863 1.5522 1.3973 28 1 3.4579 1.6594 3.1740 29 1 0.7308 0.6858 4.8249 30 1 0.8677 -0.9927 6.7070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716055864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = 14.550642 kcal Electronic energy + Delta-G solvation = -13410.778262 eV Core-core repulsion = 11138.645363 eV Total energy + Delta-G solvation = -2272.132899 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79447 -38.25840 -35.28936 -32.87759 -30.75876 -28.66605 -27.27433 -26.04207 -23.32187 -21.62793 -20.77942 -18.85327 -18.12612 -16.98900 -16.51139 -15.77321 -15.55941 -14.94653 -14.88790 -14.21193 -13.96070 -13.82100 -13.37268 -13.10255 -12.82703 -12.65239 -12.57275 -12.33925 -12.18057 -11.89697 -11.78048 -11.29463 -10.91776 -10.56915 -10.33954 -9.58957 -9.11706 -8.12649 -6.25794 -0.12086 0.66529 1.09517 1.44004 1.45444 1.52713 1.67406 2.42448 3.16648 3.38663 3.84049 4.14065 4.27081 4.39216 4.40435 4.74074 4.82180 4.86528 5.01650 5.06305 5.08813 5.22543 5.23496 5.48824 5.67587 5.75748 5.86311 6.22773 6.42406 6.72342 6.96850 7.44299 8.92697 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.047625 B = 0.006547 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.790910 B = 4275.829416 C = 4450.805635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.221 3.779 3 H -0.016 1.016 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.683 5.683 13 C 0.152 3.848 14 H 0.088 0.912 15 C -0.166 4.166 16 C -0.138 4.138 17 C -0.218 4.218 18 C 0.098 3.902 19 N -0.503 5.503 20 S 0.241 5.759 21 H 0.023 0.977 22 H 0.023 0.977 23 H 0.058 0.942 24 H 0.263 0.737 25 H 0.335 0.665 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.177 0.823 30 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 0.152 12.662 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.113 3.887 3 H 0.002 0.998 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.314 5.314 13 C 0.039 3.961 14 H 0.106 0.894 15 C -0.226 4.226 16 C -0.269 4.269 17 C -0.253 4.253 18 C -0.100 4.100 19 N -0.323 5.323 20 S 0.393 5.607 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.153 0.847 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.194 0.806 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.620 -1.901 12.654 13.062 hybrid contribution -0.181 1.797 -1.083 2.106 sum 2.439 -0.105 11.571 11.826 Atomic orbital electron populations 1.21584 0.97941 0.98698 0.99164 1.18871 0.92382 0.91357 0.86055 0.99835 1.21543 1.31773 1.12743 0.91621 0.92370 1.25650 0.95155 0.95629 1.01817 1.69995 1.37306 1.23949 1.24224 0.85611 0.78787 0.78615 0.78601 1.19958 1.21000 1.19561 1.60728 1.32550 1.32740 1.05349 1.19911 0.98601 0.91692 0.85848 0.89383 1.22396 0.96450 1.01020 1.02693 1.25651 1.00985 1.00598 0.99687 1.21595 1.06212 1.05105 0.92411 1.23310 0.96038 0.88699 1.01934 1.76777 1.19644 1.25862 1.10059 1.84105 1.49576 1.17052 1.09926 0.95799 0.95763 0.92311 0.92828 0.84670 0.92017 0.92805 0.90213 0.80551 0.76662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 9.17 71.98 0.66 -4.95 16 2 C 0.22 10.76 2.41 44.17 0.11 10.87 16 3 H -0.02 -0.83 7.11 -2.39 -0.02 -0.85 16 4 C -0.54 -28.75 8.59 25.60 0.22 -28.53 16 5 H 0.06 3.06 7.62 -2.91 -0.02 3.03 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -51.43 11.32 21.45 0.24 -51.19 16 8 Si 0.96 42.75 29.54 68.60 2.03 44.77 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 N -0.68 -27.52 5.88 -477.14 -2.81 -30.32 16 13 C 0.15 4.99 2.89 44.17 0.13 5.12 16 14 H 0.09 2.99 7.11 -2.39 -0.02 2.97 16 15 C -0.17 -4.82 9.13 71.98 0.66 -4.17 16 16 C -0.14 -4.05 5.52 24.97 0.14 -3.92 16 17 C -0.22 -5.21 10.17 21.45 0.22 -5.00 16 18 C 0.10 2.20 11.27 84.85 0.96 3.16 16 19 N -0.50 -14.40 12.09 -62.58 -0.76 -15.15 16 20 S 0.24 7.23 23.54 -56.49 -1.33 5.90 16 21 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.02 1.03 7.43 -2.38 -0.02 1.01 16 23 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 24 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 25 H 0.34 13.36 7.96 -89.70 -0.71 12.65 16 26 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 27 H 0.05 1.75 7.43 -2.39 -0.02 1.74 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.22 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -59.63 267.71 1.34 -58.30 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.42 Total: 13.75 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 3.53 Total: -26.05 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -3.32 Total: -96.66 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -1.33 Total: 5.90 kcal Total: -59.63 1.34 -58.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716055864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.846 kcal (2) G-P(sol) polarization free energy of solvation -59.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds