Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46893 * 109.47387 * 119.99848 * 2 1 3 5 5 C 1.46898 * 111.00268 * 274.99951 * 4 2 1 6 6 C 1.53000 * 109.47461 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.46973 * 180.02562 * 6 5 4 8 8 H 1.07992 * 120.00349 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99616 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99920 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99651 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47522 * 59.99817 * 11 9 7 13 13 H 1.48508 * 109.46794 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47502 * 299.99634 * 11 9 7 15 15 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 16 16 C 1.35138 * 127.24935 * 99.99847 * 15 2 1 17 17 C 1.37810 * 114.75704 * 179.97438 * 16 15 2 18 18 N 1.30078 * 116.88599 * 0.02562 * 17 16 15 19 19 S 1.69611 * 107.15010 * 359.73093 * 18 17 16 20 20 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 21 21 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 22 22 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 23 23 H 1.00903 * 110.99825 * 38.95050 * 4 2 1 24 24 H 1.09002 * 109.47134 * 299.99766 * 5 4 2 25 25 H 1.09008 * 109.47231 * 59.99487 * 5 4 2 26 26 H 1.09002 * 109.47086 * 300.00200 * 6 5 4 27 27 H 1.08994 * 109.46950 * 59.99909 * 6 5 4 28 28 H 0.97005 * 119.99385 * 180.02562 * 10 9 7 29 29 H 1.07991 * 122.61999 * 359.97438 * 16 15 2 30 30 H 1.07996 * 121.55670 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5952 -0.5331 3.5744 7 6 2.6590 0.4056 4.7516 8 1 2.3639 1.4380 4.6358 9 6 3.0952 -0.0534 5.9765 10 7 3.4550 -1.3105 6.1174 11 14 3.1750 1.1102 7.4355 12 1 1.8189 1.6468 7.7156 13 1 3.6725 0.3767 8.6270 14 1 4.0965 2.2322 7.1240 15 6 2.0323 -0.7104 -1.2305 16 6 2.4811 -0.1474 -2.3742 17 6 2.8813 -1.0445 -3.3407 18 7 2.7827 -2.3080 -3.0475 19 16 2.1620 -2.4090 -1.4723 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.4495 -1.4978 1.4100 24 1 2.7589 1.0462 2.1181 25 1 1.0871 0.6165 2.5525 26 1 1.9184 -1.3565 3.8030 27 1 3.5904 -0.9271 3.3690 28 1 3.7615 -1.6335 6.9792 29 1 2.5228 0.9219 -2.5193 30 1 3.2591 -0.7140 -4.2969 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716057578.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = 26.075748 kcal Electronic energy + Delta-G solvation = -12926.502274 eV Core-core repulsion = 10654.869141 eV Total energy + Delta-G solvation = -2271.633133 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.83458 -36.91260 -33.50691 -31.80117 -29.77503 -27.90042 -25.26478 -24.01755 -21.80131 -20.88597 -19.65701 -17.51258 -16.31546 -15.87470 -14.92410 -14.51694 -14.43808 -14.08580 -13.79345 -12.99424 -12.73033 -12.61416 -12.28009 -11.81987 -11.66917 -11.15639 -10.95263 -10.84572 -10.59915 -10.34299 -10.10208 -9.56541 -9.32560 -9.17078 -8.61824 -8.38128 -8.00299 -6.01964 -4.05128 0.82368 1.63766 2.03104 2.54209 3.31858 3.36677 3.38526 4.29492 4.46789 4.80609 5.05956 5.14349 5.24952 5.28095 5.34058 5.61212 5.74127 5.90432 5.92201 6.06260 6.24236 6.32678 6.64699 6.89228 7.31622 7.64477 7.71825 7.85302 8.03125 8.38858 9.01719 9.58845 11.09352 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.054194 B = 0.005003 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.541279 B = 5595.586299 C = 5793.818925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.150 3.850 3 H 0.097 0.903 4 N -0.686 5.686 5 C 0.067 3.933 6 C 0.025 3.975 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C -0.133 4.133 16 C -0.224 4.224 17 C 0.088 3.912 18 N -0.480 5.480 19 S 0.278 5.722 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.340 0.660 24 H 0.061 0.939 25 H 0.021 0.979 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.262 0.738 29 H 0.152 0.848 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 2.154 -15.590 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.038 3.962 3 H 0.115 0.885 4 N -0.316 5.316 5 C -0.060 4.060 6 C -0.012 4.012 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.531 5.531 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.264 4.264 16 C -0.259 4.259 17 C -0.109 4.109 18 N -0.301 5.301 19 S 0.430 5.570 20 H 0.088 0.912 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.159 0.841 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.170 0.830 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.192 -0.108 -15.446 16.006 hybrid contribution -0.673 2.661 0.687 2.830 sum -4.865 2.553 -14.760 15.749 Atomic orbital electron populations 1.22515 0.95635 1.02712 1.02827 1.19942 0.92612 0.97154 0.86537 0.88482 1.60703 1.56324 1.10448 1.04161 1.22219 0.98538 0.95144 0.90121 1.19069 0.97127 0.95338 0.89703 1.21108 1.44339 0.96330 0.94495 0.92787 1.24997 0.95302 0.95102 0.98868 1.69963 1.44184 1.14367 1.24599 0.86645 0.78381 0.80916 0.81961 1.20289 1.21245 1.20219 1.25680 1.00980 1.00457 0.99256 1.21239 1.08112 1.02925 0.93612 1.22720 0.98544 0.88422 1.01212 1.76718 1.22762 1.21500 1.09082 1.84140 1.57591 1.04332 1.10952 0.91175 0.91998 0.92124 0.84144 0.92091 0.96118 0.96697 0.95567 0.92879 0.83035 0.80527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.14 37.16 0.34 -1.70 16 2 C 0.15 2.03 3.08 -68.87 -0.21 1.82 16 3 H 0.10 1.28 7.80 -51.93 -0.40 0.88 16 4 N -0.69 -11.55 6.07 -107.95 -0.66 -12.21 16 5 C 0.07 1.34 5.42 -3.83 -0.02 1.32 16 6 C 0.03 0.64 5.23 -27.88 -0.15 0.49 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C -0.13 -1.75 5.52 -35.41 -0.20 -1.95 16 16 C -0.22 -2.57 10.17 -40.84 -0.42 -2.99 16 17 C 0.09 1.01 11.27 -18.45 -0.21 0.80 16 18 N -0.48 -6.73 12.09 28.86 0.35 -6.38 16 19 S 0.28 3.85 23.53 -107.50 -2.53 1.32 16 20 H 0.07 0.84 7.45 -51.93 -0.39 0.45 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 23 H 0.34 5.57 8.47 -39.29 -0.33 5.24 16 24 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 25 H 0.02 0.40 7.44 -51.92 -0.39 0.01 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 274.19 15.07 4.13 4.13 Total: -1.00 -30.48 274.19 -8.26 -38.75 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.01 Total: -0.52 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.27 Total: -15.53 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.43 Total: -44.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -2.53 Total: 1.32 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.48 -8.26 -38.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716057578.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.822 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds