Wall clock time and date at job start Mon Mar 30 2020 03:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00283 * 2 1 4 4 C 1.50708 * 109.46760 * 293.95026 * 3 2 1 5 5 H 1.07997 * 120.00113 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99808 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99916 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99878 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47084 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47009 * 119.99701 * 8 6 4 11 11 H 1.48499 * 109.47361 * 240.00066 * 8 6 4 12 12 C 1.46906 * 110.99888 * 123.94961 * 2 1 3 13 13 C 1.52997 * 109.46848 * 66.04509 * 12 2 1 14 14 C 1.50706 * 109.47203 * 179.97438 * 13 12 2 15 15 C 1.35140 * 127.24286 * 89.70474 * 14 13 12 16 16 C 1.37811 * 114.75475 * 179.87115 * 15 14 13 17 17 N 1.30080 * 116.88153 * 0.44525 * 16 15 14 18 18 S 1.69603 * 107.15174 * 359.76242 * 17 16 15 19 19 H 1.08997 * 109.47334 * 296.05250 * 1 2 3 20 20 H 1.09000 * 109.46674 * 56.05127 * 1 2 3 21 21 H 1.08995 * 109.47296 * 176.04950 * 1 2 3 22 22 H 1.08993 * 109.47196 * 53.94614 * 3 2 1 23 23 H 1.09000 * 109.47010 * 173.95423 * 3 2 1 24 24 H 0.96996 * 119.99080 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47121 * 186.04343 * 12 2 1 26 26 H 1.09000 * 109.47141 * 306.04541 * 12 2 1 27 27 H 1.08998 * 109.47584 * 300.00097 * 13 12 2 28 28 H 1.09005 * 109.46901 * 60.00396 * 13 12 2 29 29 H 1.07991 * 122.62075 * 0.04593 * 15 14 13 30 30 H 1.08007 * 121.55755 * 180.21164 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2986 5 1 1.0740 1.5114 -2.0486 6 6 2.0269 3.3494 -1.5286 7 7 2.7112 4.0022 -0.6147 8 14 1.5820 4.1871 -3.1379 9 1 0.8149 3.2443 -3.9912 10 1 0.7544 5.3880 -2.8585 11 1 2.8234 4.5946 -3.8436 12 6 1.9954 -0.7659 1.1377 13 6 1.6314 -2.2425 0.9705 14 6 2.1719 -3.0284 2.1373 15 6 1.5498 -3.2848 3.3092 16 6 2.2849 -4.0360 4.2006 17 7 3.4757 -4.3982 3.8226 18 16 3.7138 -3.7816 2.2607 19 1 -0.3634 0.4513 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3633 -1.0252 -0.0708 22 1 1.5611 1.9274 0.8308 23 1 3.0798 1.3443 0.1082 24 1 2.9858 4.9182 -0.7768 25 1 3.0797 -0.6611 1.1757 26 1 1.5611 -0.3871 2.0629 27 1 0.5471 -2.3474 0.9324 28 1 2.0658 -2.6213 0.0453 29 1 0.5533 -2.9312 3.5289 30 1 1.8921 -4.3079 5.1693 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719854047.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:05 Heat of formation + Delta-G solvation = 36.373186 kcal Electronic energy + Delta-G solvation = -12975.966704 eV Core-core repulsion = 10704.780101 eV Total energy + Delta-G solvation = -2271.186603 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85469 -36.93413 -33.45198 -32.23159 -29.05461 -27.08375 -25.78760 -24.10878 -22.13544 -20.21394 -19.74864 -17.70070 -16.36550 -15.80036 -14.92472 -14.64363 -14.43209 -14.01333 -13.36867 -13.34300 -12.79752 -12.48521 -12.01321 -11.79374 -11.38625 -11.15297 -10.92884 -10.66022 -10.58201 -10.47674 -10.37991 -9.93357 -9.45332 -9.13955 -8.74882 -8.46629 -7.32812 -6.05198 -4.06765 0.70814 1.50457 1.89612 2.46024 3.29678 3.37182 3.41788 4.37295 4.51503 4.92853 5.12407 5.28147 5.29544 5.33320 5.50611 5.72898 5.81039 5.89018 6.08089 6.18423 6.31833 6.35931 6.56707 6.70048 7.24084 7.29495 7.76185 8.03489 8.13764 8.49457 9.01040 9.57689 11.05854 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.060490 B = 0.004910 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.775089 B = 5700.981855 C = 5839.886979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.541 5.541 3 C 0.192 3.808 4 C -0.508 4.508 5 H 0.065 0.935 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.062 3.938 13 C -0.047 4.047 14 C -0.144 4.144 15 C -0.220 4.220 16 C 0.091 3.909 17 N -0.474 5.474 18 S 0.252 5.748 19 H 0.011 0.989 20 H 0.076 0.924 21 H 0.046 0.954 22 H -0.008 1.008 23 H 0.030 0.970 24 H 0.261 0.739 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.154 0.846 30 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 -13.611 6.433 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.265 5.265 3 C 0.067 3.933 4 C -0.546 4.546 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.067 4.067 13 C -0.087 4.087 14 C -0.275 4.275 15 C -0.254 4.254 16 C -0.106 4.106 17 N -0.294 5.294 18 S 0.404 5.596 19 H 0.030 0.970 20 H 0.094 0.906 21 H 0.065 0.935 22 H 0.009 0.991 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.172 0.828 30 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.537 -14.447 5.729 15.550 hybrid contribution -2.247 1.603 0.545 2.814 sum -2.784 -12.843 6.273 14.562 Atomic orbital electron populations 1.22279 0.88926 0.99552 1.00726 1.62112 1.07014 1.18032 1.39351 1.19754 0.95453 0.81313 0.96771 1.21196 1.34849 0.96921 1.01668 0.91720 1.25000 0.95273 0.97350 0.97030 1.69972 1.38412 1.11424 1.34025 0.86435 0.78182 0.79300 0.83469 1.19623 1.21116 1.20977 1.22012 1.00459 0.91093 0.93182 1.20251 1.01324 0.94227 0.92863 1.25672 0.99905 1.01634 1.00270 1.21330 1.04501 1.05828 0.93774 1.22797 0.90269 0.96039 1.01517 1.76754 1.19799 1.25240 1.07600 1.84163 1.15594 1.44921 1.14934 0.97015 0.90567 0.93501 0.99059 0.95152 0.92942 0.91119 0.95529 0.89588 0.89247 0.82796 0.80305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.14 60.06 0.55 1.18 16 2 N -0.54 -11.32 4.75 -244.37 -1.16 -12.48 16 3 C 0.19 4.96 4.72 -4.97 -0.02 4.94 16 4 C -0.51 -14.11 8.46 -34.44 -0.29 -14.40 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.06 1.08 4.94 -3.82 -0.02 1.06 16 13 C -0.05 -0.64 5.72 -27.88 -0.16 -0.80 16 14 C -0.14 -1.83 5.85 -35.41 -0.21 -2.04 16 15 C -0.22 -2.48 10.17 -40.84 -0.42 -2.89 16 16 C 0.09 1.00 11.27 -18.45 -0.21 0.80 16 17 N -0.47 -6.34 12.09 28.86 0.35 -5.99 16 18 S 0.25 3.27 23.72 -107.50 -2.55 0.72 16 19 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 20 H 0.08 1.53 6.76 -51.93 -0.35 1.18 16 21 H 0.05 0.71 6.47 -51.93 -0.34 0.38 16 22 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 23 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 26 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.09 1.08 6.55 -51.93 -0.34 0.74 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 270.15 15.07 4.07 4.07 Total: -1.00 -30.32 270.15 -8.34 -38.66 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: -3.89 Total: -4.78 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.87 Total: -10.72 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.08 Total: -44.35 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.55 Total: 0.72 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.32 -8.34 -38.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719854047.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.036 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds