Wall clock time and date at job start Mon Mar 30 2020 03:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00283 * 2 1 4 4 C 1.50708 * 109.46760 * 293.95026 * 3 2 1 5 5 H 1.07997 * 120.00113 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99808 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99916 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99878 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47084 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47009 * 119.99701 * 8 6 4 11 11 H 1.48499 * 109.47361 * 240.00066 * 8 6 4 12 12 C 1.46906 * 110.99888 * 123.94961 * 2 1 3 13 13 C 1.52997 * 109.46848 * 66.04509 * 12 2 1 14 14 C 1.50706 * 109.47203 * 179.97438 * 13 12 2 15 15 C 1.35140 * 127.24286 * 89.70474 * 14 13 12 16 16 C 1.37811 * 114.75475 * 179.87115 * 15 14 13 17 17 N 1.30080 * 116.88153 * 0.44525 * 16 15 14 18 18 S 1.69603 * 107.15174 * 359.76242 * 17 16 15 19 19 H 1.08997 * 109.47334 * 296.05250 * 1 2 3 20 20 H 1.09000 * 109.46674 * 56.05127 * 1 2 3 21 21 H 1.08995 * 109.47296 * 176.04950 * 1 2 3 22 22 H 1.08993 * 109.47196 * 53.94614 * 3 2 1 23 23 H 1.09000 * 109.47010 * 173.95423 * 3 2 1 24 24 H 0.96996 * 119.99080 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47121 * 186.04343 * 12 2 1 26 26 H 1.09000 * 109.47141 * 306.04541 * 12 2 1 27 27 H 1.08998 * 109.47584 * 300.00097 * 13 12 2 28 28 H 1.09005 * 109.46901 * 60.00396 * 13 12 2 29 29 H 1.07991 * 122.62075 * 0.04593 * 15 14 13 30 30 H 1.08007 * 121.55755 * 180.21164 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2986 5 1 1.0740 1.5114 -2.0486 6 6 2.0269 3.3494 -1.5286 7 7 2.7112 4.0022 -0.6147 8 14 1.5820 4.1871 -3.1379 9 1 0.8149 3.2443 -3.9912 10 1 0.7544 5.3880 -2.8585 11 1 2.8234 4.5946 -3.8436 12 6 1.9954 -0.7659 1.1377 13 6 1.6314 -2.2425 0.9705 14 6 2.1719 -3.0284 2.1373 15 6 1.5498 -3.2848 3.3092 16 6 2.2849 -4.0360 4.2006 17 7 3.4757 -4.3982 3.8226 18 16 3.7138 -3.7816 2.2607 19 1 -0.3634 0.4513 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3633 -1.0252 -0.0708 22 1 1.5611 1.9274 0.8308 23 1 3.0798 1.3443 0.1082 24 1 2.9858 4.9182 -0.7768 25 1 3.0797 -0.6611 1.1757 26 1 1.5611 -0.3871 2.0629 27 1 0.5471 -2.3474 0.9324 28 1 2.0658 -2.6213 0.0453 29 1 0.5533 -2.9312 3.5289 30 1 1.8921 -4.3079 5.1693 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719854047.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:05 Heat of formation + Delta-G solvation = 16.334193 kcal Electronic energy + Delta-G solvation = -12976.835660 eV Core-core repulsion = 10704.780101 eV Total energy + Delta-G solvation = -2272.055559 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81910 -38.49206 -35.10122 -33.88982 -30.37671 -28.88372 -27.25329 -25.45222 -23.65437 -21.80955 -20.71889 -18.73321 -18.47453 -16.98134 -16.52405 -16.17542 -15.87509 -15.28067 -14.81946 -14.63415 -13.94714 -13.89870 -13.73300 -13.19809 -12.96565 -12.76585 -12.52864 -12.45630 -12.25621 -11.93998 -11.55200 -11.39278 -11.31335 -10.62426 -10.38382 -9.69904 -9.05109 -8.20528 -6.30760 -0.24279 0.54465 0.96466 1.42391 1.43368 1.56796 1.59212 2.41152 3.12345 3.22256 3.77325 4.00935 4.23435 4.27036 4.35026 4.53388 4.63838 4.72789 4.81371 4.98098 4.99813 5.09792 5.14713 5.22041 5.33383 5.65371 5.67967 6.04224 6.30533 6.60425 6.86044 7.39382 8.91082 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.060490 B = 0.004910 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.775089 B = 5700.981855 C = 5839.886979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.548 5.548 3 C 0.205 3.795 4 C -0.523 4.523 5 H 0.067 0.933 6 C 0.000 4.000 7 N -0.937 5.937 8 Si 0.971 3.029 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.065 3.935 13 C -0.031 4.031 14 C -0.157 4.157 15 C -0.209 4.209 16 C 0.097 3.903 17 N -0.497 5.497 18 S 0.222 5.778 19 H 0.012 0.988 20 H 0.057 0.943 21 H 0.088 0.912 22 H -0.037 1.037 23 H 0.001 0.999 24 H 0.264 0.736 25 H 0.054 0.946 26 H 0.027 0.973 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.181 0.819 30 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 -14.572 6.351 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.272 5.272 3 C 0.079 3.921 4 C -0.561 4.561 5 H 0.085 0.915 6 C -0.198 4.198 7 N -0.578 5.578 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.206 1.206 12 C -0.065 4.065 13 C -0.071 4.071 14 C -0.287 4.287 15 C -0.243 4.243 16 C -0.100 4.100 17 N -0.317 5.317 18 S 0.374 5.626 19 H 0.030 0.970 20 H 0.076 0.924 21 H 0.107 0.893 22 H -0.020 1.020 23 H 0.019 0.981 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.123 0.877 28 H 0.107 0.893 29 H 0.198 0.802 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.119 -15.437 5.645 16.573 hybrid contribution -1.777 1.850 0.684 2.655 sum -3.896 -13.587 6.329 15.487 Atomic orbital electron populations 1.22313 0.87144 1.01870 0.99918 1.62016 1.08654 1.15179 1.41386 1.19405 0.93614 0.83892 0.95178 1.21523 1.34785 0.97461 1.02324 0.91510 1.25942 0.94990 0.98112 1.00738 1.70101 1.39515 1.11902 1.36240 0.85308 0.78043 0.78211 0.78901 1.18454 1.20444 1.20555 1.22020 0.99430 0.93172 0.91854 1.20033 1.02438 0.91257 0.93382 1.25581 0.99844 1.02554 1.00770 1.21679 1.05351 1.04498 0.92785 1.23404 0.89300 0.94631 1.02708 1.76821 1.21187 1.26191 1.07468 1.84231 1.16668 1.45910 1.15771 0.96956 0.92412 0.89342 1.01958 0.98065 0.92706 0.92699 0.95479 0.87666 0.89313 0.80221 0.76618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 9.14 127.69 1.17 2.43 16 2 N -0.55 -22.88 4.75 -927.05 -4.41 -27.28 16 3 C 0.21 10.94 4.72 85.56 0.40 11.34 16 4 C -0.52 -29.40 8.46 25.60 0.22 -29.19 16 5 H 0.07 3.65 7.12 -2.91 -0.02 3.63 16 6 C 0.00 0.00 5.46 84.65 0.46 0.46 16 7 N -0.94 -56.52 13.29 21.45 0.28 -56.24 16 8 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 9 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.06 2.20 4.94 86.30 0.43 2.63 16 13 C -0.03 -0.79 5.72 29.85 0.17 -0.62 16 14 C -0.16 -3.71 5.85 24.97 0.15 -3.56 16 15 C -0.21 -4.06 10.17 21.45 0.22 -3.84 16 16 C 0.10 1.86 11.27 84.85 0.96 2.81 16 17 N -0.50 -12.55 12.09 -62.60 -0.76 -13.30 16 18 S 0.22 5.64 23.72 -56.49 -1.34 4.30 16 19 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 20 H 0.06 2.26 6.76 -2.39 -0.02 2.25 16 21 H 0.09 2.40 6.47 -2.39 -0.02 2.39 16 22 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 23 H 0.00 0.07 7.93 -2.39 -0.02 0.05 16 24 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 25 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 26 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 27 H 0.11 2.25 6.55 -2.39 -0.02 2.24 16 28 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.18 2.55 8.06 -2.92 -0.02 2.52 16 30 H 0.22 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -66.04 270.15 1.09 -64.94 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 1.12 Total: -0.81 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.17 Total: -17.54 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -4.88 Total: -96.82 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.34 Total: 4.30 kcal Total: -66.04 1.09 -64.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719854047.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.279 kcal (2) G-P(sol) polarization free energy of solvation -66.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds