Wall clock time and date at job start Mon Mar 30 2020 03:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00064 * 2 1 4 4 H 1.48499 * 109.47116 * 269.99825 * 3 2 1 5 5 H 1.48498 * 109.47456 * 29.99725 * 3 2 1 6 6 H 1.48508 * 109.47175 * 150.00092 * 3 2 1 7 7 C 1.38814 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99875 * 162.94524 * 7 2 1 9 9 N 1.36937 * 120.00037 * 342.93493 * 7 2 1 10 10 C 1.46980 * 120.68121 * 151.65876 * 9 7 2 11 11 C 1.53289 * 108.59215 * 124.52756 * 10 9 7 12 12 N 1.47563 * 108.60399 * 50.05733 * 11 10 9 13 13 C 1.34199 * 118.32716 * 125.01749 * 12 11 10 14 14 O 1.21513 * 118.94270 * 357.24390 * 13 12 11 15 15 O 1.34392 * 122.11570 * 177.21962 * 13 12 11 16 16 C 1.45649 * 115.55115 * 335.33984 * 15 13 12 17 17 C 1.52966 * 107.99016 * 54.23023 * 16 15 13 18 18 C 1.45988 * 118.43091 * 304.63709 * 12 11 10 19 19 H 1.09002 * 108.72781 * 296.34519 * 18 12 11 20 20 C 1.46953 * 120.68312 * 331.64567 * 9 7 2 21 21 H 0.97005 * 120.00099 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.61813 * 4.79877 * 10 9 7 23 23 H 1.09002 * 109.62423 * 244.25834 * 10 9 7 24 24 H 1.08997 * 109.61054 * 290.32384 * 11 10 9 25 25 H 1.08995 * 109.61511 * 169.79405 * 11 10 9 26 26 H 1.09005 * 109.76024 * 173.85437 * 16 15 13 27 27 H 1.08997 * 109.76016 * 294.56061 * 16 15 13 28 28 H 1.08996 * 109.30292 * 181.67175 * 17 16 15 29 29 H 1.08995 * 109.29873 * 62.28905 * 17 16 15 30 30 H 1.09006 * 109.59749 * 114.91464 * 20 9 7 31 31 H 1.09003 * 109.59918 * 354.44283 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0545 -1.2227 -0.2749 9 7 1.3707 -2.3621 0.3470 10 6 1.8102 -3.6537 -0.1999 11 6 2.1120 -4.6011 0.9667 12 7 0.9642 -4.5867 1.8940 13 6 0.3832 -5.7553 2.2063 14 8 0.7873 -6.7725 1.6786 15 8 -0.6310 -5.8369 3.0843 16 6 -0.7010 -4.7621 4.0648 17 6 -0.7163 -3.4327 3.3082 18 6 0.5221 -3.3039 2.4328 19 1 1.3233 -2.8854 3.0420 20 6 0.2311 -2.3412 1.2745 21 1 -0.4850 0.8401 -0.0004 22 1 2.7105 -3.5107 -0.7976 23 1 1.0197 -4.0768 -0.8198 24 1 3.0081 -4.2651 1.4884 25 1 2.2634 -5.6117 0.5876 26 1 -1.6121 -4.8605 4.6551 27 1 0.1689 -4.8038 4.7201 28 1 -0.7386 -2.6110 4.0239 29 1 -1.6069 -3.3850 2.6816 30 1 -0.6713 -2.6597 0.7523 31 1 0.0945 -1.3321 1.6632 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764439029.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:15 Heat of formation + Delta-G solvation = -47.147663 kcal Electronic energy + Delta-G solvation = -16520.205880 eV Core-core repulsion = 13802.644670 eV Total energy + Delta-G solvation = -2717.561210 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67956 -37.28652 -36.89206 -34.09872 -32.46452 -31.10977 -29.11239 -26.95199 -24.22680 -23.77493 -22.16397 -20.38620 -19.21999 -17.87856 -16.63732 -16.46260 -15.66271 -15.12280 -14.60475 -14.22187 -13.86602 -13.63807 -13.35590 -13.21271 -12.93223 -12.02721 -11.63017 -11.49230 -11.24035 -10.90835 -10.77203 -10.60845 -10.36231 -10.34252 -10.19981 -9.92361 -9.66359 -8.68564 -8.39596 -6.80372 -5.93708 -3.38146 2.88427 3.12449 3.29013 3.36640 3.38591 3.82701 4.37167 4.71012 4.87580 5.11235 5.18516 5.25802 5.45288 5.61470 5.68784 5.87556 5.89742 6.06006 6.08465 6.29835 6.35664 6.58355 6.79822 6.90653 7.09823 7.34827 7.65987 8.12987 8.27302 8.47436 9.03612 9.65970 10.23488 11.14532 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.043296 B = 0.008754 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.559281 B = 3197.882245 C = 3617.894750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.129 3.871 11 C 0.103 3.897 12 N -0.600 5.600 13 C 0.647 3.353 14 O -0.551 6.551 15 O -0.350 6.350 16 C 0.063 3.937 17 C -0.164 4.164 18 C 0.108 3.892 19 H 0.072 0.928 20 C 0.168 3.832 21 H 0.256 0.744 22 H 0.070 0.930 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.025 0.975 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -4.190 7.683 8.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.314 5.314 10 C 0.002 3.998 11 C -0.020 4.020 12 N -0.345 5.345 13 C 0.401 3.599 14 O -0.438 6.438 15 O -0.263 6.263 16 C -0.011 4.011 17 C -0.202 4.202 18 C 0.003 3.997 19 H 0.090 0.910 20 C 0.041 3.959 21 H 0.066 0.934 22 H 0.089 0.911 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.286 -4.693 7.465 8.822 hybrid contribution 0.335 1.202 0.072 1.250 sum 0.049 -3.490 7.537 8.306 Atomic orbital electron populations 1.70008 1.05323 1.25821 1.53490 1.25092 0.95328 0.98609 1.00467 0.86265 0.79152 0.83281 0.77885 1.21242 1.21475 1.20368 1.19203 0.92758 0.84490 1.42186 0.91323 1.44006 1.36256 1.01833 1.49282 1.21334 0.98728 0.86901 0.92798 1.22384 0.86308 1.01772 0.91530 1.47551 1.33967 1.05174 1.47798 1.18027 0.78134 0.84087 0.79675 1.90904 1.62107 1.34707 1.56073 1.86841 1.47813 1.48906 1.42695 1.23292 1.03668 0.84932 0.89224 1.22247 0.99902 0.97960 1.00118 1.21844 0.95773 0.84347 0.97701 0.91033 1.21242 0.89413 0.97849 0.87440 0.93402 0.91127 0.95546 0.91610 0.89131 0.87094 0.91139 0.88375 0.89633 0.95649 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 11.20 55.49 0.62 -24.18 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 3 Si 0.90 20.59 29.59 -169.99 -5.03 15.56 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.26 -6.69 9.59 -15.06 -0.14 -6.83 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.19 2.97 -172.06 -0.51 -14.70 16 10 C 0.13 2.69 6.67 -3.63 -0.02 2.66 16 11 C 0.10 1.91 6.51 -3.31 -0.02 1.89 16 12 N -0.60 -11.32 2.94 -171.70 -0.50 -11.82 16 13 C 0.65 12.78 8.30 53.80 0.45 13.23 16 14 O -0.55 -12.37 16.25 -19.37 -0.31 -12.69 16 15 O -0.35 -6.10 10.57 -39.72 -0.42 -6.52 16 16 C 0.06 0.79 7.15 37.14 0.27 1.05 16 17 C -0.16 -2.24 5.65 -27.16 -0.15 -2.40 16 18 C 0.11 1.92 3.19 -68.41 -0.22 1.70 16 19 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 20 C 0.17 3.71 4.72 -3.59 -0.02 3.69 16 21 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 22 H 0.07 1.38 7.93 -51.93 -0.41 0.96 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.09 1.65 6.73 -51.93 -0.35 1.30 16 26 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.24 7.77 -51.93 -0.40 0.83 16 30 H 0.03 0.61 7.96 -51.93 -0.41 0.20 16 31 H 0.10 2.47 6.03 -51.93 -0.31 2.15 16 LS Contribution 252.98 15.07 3.81 3.81 Total: -1.00 -30.84 252.98 -6.27 -37.12 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.98 Total: -1.60 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 0.05 Total: 15.02 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.39 Total: -50.71 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.73 Total: -19.20 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.84 -6.27 -37.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764439029.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.032 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds