Wall clock time and date at job start Mon Mar 30 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00528 * 2 1 4 4 H 1.48506 * 109.47138 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47453 * 119.99551 * 3 2 1 6 6 H 1.48504 * 109.47204 * 239.99762 * 3 2 1 7 7 C 1.37883 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99952 * 178.35926 * 7 2 1 9 9 C 1.50703 * 119.99742 * 358.36869 * 7 2 1 10 10 C 1.50691 * 110.43532 * 298.70841 * 9 7 2 11 11 O 1.20830 * 120.00000 * 127.29742 * 10 9 7 12 12 O 1.34235 * 120.00456 * 307.29641 * 10 9 7 13 13 C 1.54805 * 110.48842 * 61.39985 * 9 7 2 14 14 C 1.55000 * 102.09486 * 97.79562 * 13 9 7 15 15 O 1.44384 * 103.48832 * 37.02059 * 14 13 9 16 16 C 1.43742 * 106.97510 * 319.94087 * 15 14 13 17 17 H 1.08998 * 109.87808 * 267.08764 * 16 15 14 18 18 C 1.52997 * 109.87752 * 145.93830 * 16 15 14 19 19 C 1.53003 * 117.49932 * 136.27043 * 18 16 15 20 20 C 1.53009 * 117.49937 * 67.60974 * 18 16 15 21 21 H 0.96996 * 120.00209 * 178.58240 * 1 2 3 22 22 H 0.96696 * 117.00596 * 179.97438 * 12 10 9 23 23 H 1.09000 * 110.90740 * 215.98807 * 13 9 7 24 24 H 1.08999 * 110.91239 * 339.59452 * 13 9 7 25 25 H 1.09002 * 110.61487 * 278.52018 * 14 13 9 26 26 H 1.08997 * 110.75666 * 155.58890 * 14 13 9 27 27 H 1.09000 * 115.55091 * 281.93973 * 18 16 15 28 28 H 1.09001 * 117.50142 * 359.97438 * 19 18 16 29 29 H 1.08997 * 117.50103 * 145.02229 * 19 18 16 30 30 H 1.09000 * 117.49630 * 214.97711 * 20 18 16 31 31 H 1.08997 * 117.49524 * 0.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2126 6 1 3.1031 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0842 -1.1944 -0.0262 9 6 1.2513 -2.4989 0.0383 10 6 0.4316 -2.5970 1.2989 11 8 -0.7487 -2.8474 1.2342 12 8 1.0125 -2.4061 2.4939 13 6 0.3481 -2.6395 -1.2111 14 6 1.2174 -3.5220 -2.1427 15 8 1.8599 -4.4409 -1.2330 16 6 2.2264 -3.6877 -0.0649 17 1 3.2481 -3.3214 -0.1656 18 6 2.1068 -4.5682 1.1806 19 6 3.2374 -4.4947 2.2089 20 6 3.0901 -5.7322 1.3199 21 1 -0.4850 -0.8397 -0.0208 22 1 0.4460 -2.4788 3.2742 23 1 -0.5866 -3.1414 -0.9609 24 1 0.1565 -1.6668 -1.6641 25 1 1.9589 -2.9160 -2.6634 26 1 0.5943 -4.0610 -2.8563 27 1 1.0943 -4.7171 1.5556 28 1 4.0666 -3.8194 1.9980 29 1 2.9687 -4.5957 3.2604 30 1 2.7245 -6.6467 1.7870 31 1 3.8224 -5.8703 0.5245 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821977449.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:17 Heat of formation + Delta-G solvation = -136.501851 kcal Electronic energy + Delta-G solvation = -16905.823760 eV Core-core repulsion = 14152.095111 eV Total energy + Delta-G solvation = -2753.728649 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.93581 -39.78723 -37.66781 -36.79400 -35.75211 -32.27077 -30.45168 -26.78121 -25.10173 -23.94223 -23.15650 -22.15094 -20.77230 -19.64200 -18.68337 -17.87209 -16.82742 -16.68919 -16.08589 -15.87148 -15.57082 -15.33103 -14.82222 -14.27054 -13.78852 -13.41043 -13.01239 -12.68235 -12.42754 -12.37768 -12.33403 -12.25428 -12.01127 -11.91041 -11.61520 -11.17878 -10.98969 -10.69757 -10.59520 -10.53887 -8.66751 -6.50011 1.47451 1.56544 1.63908 1.81290 2.44246 2.54256 2.64300 3.11370 3.23403 3.65619 3.76548 3.99172 4.17709 4.20334 4.25957 4.40035 4.53925 4.61472 4.78359 4.81134 4.95845 5.00154 5.03045 5.12873 5.23731 5.27751 5.60890 5.74654 6.00129 6.06080 6.44449 7.23866 7.31367 8.68360 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.026966 B = 0.012282 C = 0.011561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.082773 B = 2279.161748 C = 2421.325254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.020 4.020 3 Si 1.114 2.886 4 H -0.290 1.290 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.587 4.587 8 H 0.069 0.931 9 C 0.029 3.971 10 C 0.509 3.491 11 O -0.582 6.582 12 O -0.497 6.497 13 C -0.144 4.144 14 C 0.061 3.939 15 O -0.386 6.386 16 C 0.134 3.866 17 H 0.075 0.925 18 C -0.182 4.182 19 C -0.141 4.141 20 C -0.155 4.155 21 H 0.270 0.730 22 H 0.402 0.598 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 -6.314 1.723 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.220 4.220 3 Si 0.935 3.065 4 H -0.216 1.216 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.624 4.624 8 H 0.087 0.913 9 C 0.027 3.973 10 C 0.356 3.644 11 O -0.476 6.476 12 O -0.307 6.307 13 C -0.182 4.182 14 C -0.016 4.016 15 O -0.306 6.306 16 C 0.076 3.924 17 H 0.093 0.907 18 C -0.200 4.200 19 C -0.178 4.178 20 C -0.192 4.192 21 H 0.082 0.918 22 H 0.260 0.740 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.469 -4.953 1.349 8.258 hybrid contribution -0.995 -1.251 0.563 1.695 sum 5.473 -6.204 1.913 8.491 Atomic orbital electron populations 1.70878 1.08080 1.31675 1.46341 1.27282 0.96263 1.06485 0.92013 0.82969 0.74144 0.71050 0.78324 1.21632 1.19360 1.18835 1.21946 0.94498 0.89781 1.56215 0.91333 1.19679 0.93184 0.97734 0.86663 1.24388 0.86116 0.67658 0.86283 1.90530 1.19683 1.49163 1.88232 1.84642 1.46255 1.83284 1.16480 1.23190 0.98145 1.00348 0.96554 1.23531 0.94889 0.90955 0.92182 1.88736 1.78971 1.34301 1.28565 1.22183 0.97096 0.88347 0.84772 0.90748 1.22224 0.95738 1.03905 0.98176 1.22911 0.98459 1.00146 0.96325 1.22994 1.01018 0.92613 1.02576 0.91839 0.74019 0.92810 0.91440 0.91396 0.87025 0.90633 0.88477 0.87270 0.87273 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 12.72 21.45 0.27 -54.84 16 2 C -0.02 -1.08 4.96 84.66 0.42 -0.66 16 3 Si 1.11 47.25 29.90 68.60 2.05 49.30 16 4 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.59 -30.37 7.86 25.60 0.20 -30.17 16 8 H 0.07 3.43 7.37 -2.91 -0.02 3.41 16 9 C 0.03 1.42 0.57 -52.69 -0.03 1.39 16 10 C 0.51 25.13 3.46 71.23 0.25 25.38 16 11 O -0.58 -31.44 15.53 21.95 0.34 -31.10 16 12 O -0.50 -20.97 11.79 -51.46 -0.61 -21.58 16 13 C -0.14 -6.88 4.89 31.89 0.16 -6.72 16 14 C 0.06 2.36 7.72 72.67 0.56 2.92 16 15 O -0.39 -15.87 11.18 -148.98 -1.67 -17.54 16 16 C 0.13 5.61 3.24 30.97 0.10 5.71 16 17 H 0.07 3.11 7.25 -2.39 -0.02 3.09 16 18 C -0.18 -6.67 3.74 -10.79 -0.04 -6.71 16 19 C -0.14 -4.16 9.77 30.62 0.30 -3.86 16 20 C -0.16 -4.37 10.25 30.62 0.31 -4.06 16 21 H 0.27 16.35 4.41 -92.71 -0.41 15.94 16 22 H 0.40 13.04 9.10 -74.06 -0.67 12.37 16 23 H 0.05 2.68 6.84 -2.39 -0.02 2.67 16 24 H 0.07 3.50 6.38 -2.39 -0.02 3.49 16 25 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 27 H 0.08 3.06 6.58 -2.39 -0.02 3.05 16 28 H 0.10 2.85 8.11 -2.39 -0.02 2.83 16 29 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.11 2.61 8.14 -2.39 -0.02 2.60 16 31 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -66.37 255.65 3.46 -62.92 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.84 Total: 29.62 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 2.23 Total: -16.78 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.27 Total: -54.84 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -1.93 Total: -70.22 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.05 Total: 49.30 kcal Total: -66.37 3.46 -62.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821977449.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.585 kcal (2) G-P(sol) polarization free energy of solvation -66.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds