Wall clock time and date at job start Mon Mar 30 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00272 * 2 1 4 4 H 1.48497 * 109.46918 * 270.00541 * 3 2 1 5 5 H 1.48498 * 109.46736 * 30.00126 * 3 2 1 6 6 H 1.48500 * 109.47349 * 150.00245 * 3 2 1 7 7 C 1.37883 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.50699 * 110.56575 * 57.32010 * 9 7 2 11 11 O 1.20824 * 119.99766 * 122.68164 * 10 9 7 12 12 O 1.34226 * 119.99839 * 302.68102 * 10 9 7 13 13 C 1.54508 * 110.50778 * 294.64185 * 9 7 2 14 14 C 1.54480 * 104.06123 * 241.35688 * 13 9 7 15 15 O 1.44422 * 104.80389 * 23.98008 * 14 13 9 16 16 C 1.44427 * 105.27497 * 319.48863 * 15 14 13 17 17 H 1.09001 * 110.46136 * 281.63124 * 16 15 14 18 18 C 1.53002 * 110.36971 * 159.34336 * 16 15 14 19 19 C 1.53002 * 117.49773 * 69.62158 * 18 16 15 20 20 C 1.53000 * 60.02940 * 252.51785 * 19 18 16 21 21 H 0.96995 * 119.99712 * 359.97438 * 1 2 3 22 22 H 0.96702 * 116.99621 * 180.02562 * 12 10 9 23 23 H 1.09000 * 110.51509 * 0.02562 * 13 9 7 24 24 H 1.09000 * 110.51382 * 122.71297 * 13 9 7 25 25 H 1.09005 * 110.37505 * 142.81431 * 14 13 9 26 26 H 1.09004 * 110.37457 * 265.03425 * 14 13 9 27 27 H 1.09000 * 115.55766 * 215.30473 * 18 16 15 28 28 H 1.09002 * 117.49918 * 145.01819 * 19 18 16 29 29 H 1.09002 * 117.49754 * 0.02562 * 19 18 16 30 30 H 1.09008 * 117.49673 * 107.47884 * 20 19 18 31 31 H 1.08999 * 117.49942 * 252.47315 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 0.3261 -2.5765 -1.1878 11 8 0.4255 -3.4898 -1.9726 12 8 -0.6081 -1.6307 -1.3734 13 6 0.4583 -2.6666 1.3151 14 6 1.0555 -3.9401 1.9537 15 8 2.3809 -4.0487 1.3904 16 6 2.2334 -3.6914 -0.0012 17 1 1.8177 -4.5253 -0.5667 18 6 3.5818 -3.2701 -0.5887 19 6 4.6416 -4.3577 -0.7757 20 6 4.8012 -3.3179 0.3352 21 1 -0.4849 0.8400 0.0004 22 1 -1.1783 -1.7231 -2.1489 23 1 0.6111 -1.8052 1.9653 24 1 -0.6026 -2.8053 1.1068 25 1 1.1113 -3.8312 3.0369 26 1 0.4572 -4.8127 1.6913 27 1 3.5430 -2.4724 -1.3305 28 1 5.3001 -4.2754 -1.6405 29 1 4.3780 -5.3734 -0.4806 30 1 4.6423 -3.6495 1.3615 31 1 5.5650 -2.5518 0.2016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821977450.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:20 Heat of formation + Delta-G solvation = -96.151256 kcal Electronic energy + Delta-G solvation = -16841.748254 eV Core-core repulsion = 14089.769338 eV Total energy + Delta-G solvation = -2751.978916 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67865 -37.88179 -35.68920 -34.56668 -33.37013 -30.63239 -28.52095 -25.03162 -23.42683 -21.81742 -21.50169 -19.82229 -19.16805 -16.93616 -16.24954 -15.79271 -15.09416 -14.68645 -14.40059 -14.10161 -13.73852 -13.47083 -12.97094 -12.24912 -11.43567 -11.36655 -11.09320 -10.97594 -10.82736 -10.80114 -10.61400 -10.28343 -10.03699 -9.87531 -9.63580 -9.37544 -9.34694 -8.81957 -8.61100 -8.41699 -6.10305 -4.25603 3.23043 3.30504 3.33970 3.71001 4.29802 4.42442 4.70506 4.83667 5.14739 5.41026 5.64575 5.75314 5.85895 5.95552 5.97837 6.20648 6.24540 6.40455 6.55724 6.66307 6.70055 6.79553 6.84097 6.92402 7.08368 7.38175 7.68356 7.78839 7.90876 8.07735 8.72468 9.38115 9.47341 10.86879 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.014216 C = 0.011647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.673361 B = 1969.127021 C = 2403.397980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.080 0.920 9 C 0.061 3.939 10 C 0.492 3.508 11 O -0.582 6.582 12 O -0.435 6.435 13 C -0.118 4.118 14 C 0.041 3.959 15 O -0.372 6.372 16 C 0.119 3.881 17 H 0.069 0.931 18 C -0.115 4.115 19 C -0.197 4.197 20 C -0.165 4.165 21 H 0.263 0.737 22 H 0.345 0.655 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 -3.257 1.156 3.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.098 0.902 9 C 0.059 3.941 10 C 0.338 3.662 11 O -0.478 6.478 12 O -0.237 6.237 13 C -0.156 4.156 14 C -0.036 4.036 15 O -0.292 6.292 16 C 0.062 3.938 17 H 0.087 0.913 18 C -0.133 4.133 19 C -0.234 4.234 20 C -0.202 4.202 21 H 0.073 0.927 22 H 0.198 0.802 23 H 0.103 0.897 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.055 -3.363 1.437 4.195 hybrid contribution -0.264 0.981 -0.724 1.247 sum 1.790 -2.382 0.713 3.064 Atomic orbital electron populations 1.69869 1.05327 1.26401 1.44253 1.25096 0.95002 0.99365 0.95044 0.86535 0.80094 0.83025 0.78159 1.20721 1.21127 1.19583 1.20994 0.93580 0.87587 1.53004 0.90155 1.19173 0.90234 0.96351 0.88383 1.24878 0.77914 0.76536 0.86848 1.90511 1.72096 1.36746 1.48401 1.85763 1.43442 1.48503 1.45952 1.22883 0.98241 0.96831 0.97684 1.23409 0.84525 0.97406 0.98271 1.88991 1.27666 1.89508 1.22996 1.22332 0.93912 0.95554 0.82033 0.91306 1.22218 0.88918 0.99952 1.02219 1.22990 1.04071 0.95491 1.00804 1.22743 0.99907 1.00997 0.96511 0.92676 0.80172 0.89671 0.92632 0.90229 0.93963 0.86212 0.89747 0.89567 0.88220 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.05 9.20 55.43 0.51 -20.54 16 2 C 0.06 1.56 4.97 -17.82 -0.09 1.47 16 3 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.52 -13.04 6.93 -34.44 -0.24 -13.28 16 8 H 0.08 2.03 5.67 -52.48 -0.30 1.73 16 9 C 0.06 1.45 0.59 -155.25 -0.09 1.36 16 10 C 0.49 12.15 6.77 36.01 0.24 12.39 16 11 O -0.58 -14.92 16.21 -18.75 -0.30 -15.23 16 12 O -0.44 -10.21 9.63 -39.25 -0.38 -10.59 16 13 C -0.12 -2.61 5.63 -25.16 -0.14 -2.76 16 14 C 0.04 0.79 7.63 37.93 0.29 1.08 16 15 O -0.37 -7.94 9.77 -35.23 -0.34 -8.29 16 16 C 0.12 2.65 2.91 -25.96 -0.08 2.57 16 17 H 0.07 1.60 6.90 -51.93 -0.36 1.24 16 18 C -0.12 -2.38 4.06 -90.58 -0.37 -2.75 16 19 C -0.20 -3.41 10.25 -26.73 -0.27 -3.69 16 20 C -0.16 -3.01 9.81 -26.70 -0.26 -3.27 16 21 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 22 H 0.35 6.57 9.10 45.56 0.41 6.99 16 23 H 0.08 2.01 7.55 -51.93 -0.39 1.61 16 24 H 0.05 1.22 7.73 -51.93 -0.40 0.82 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.12 2.63 6.88 -51.93 -0.36 2.27 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.10 1.87 7.06 -51.92 -0.37 1.51 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 255.12 15.07 3.84 3.84 Total: -1.00 -28.07 255.12 -5.71 -33.77 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.01 Total: 8.91 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.01 Total: -6.87 kcal Atomic # 7 Polarization: -21.05 SS G_CDS: 0.51 Total: -20.54 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.03 Total: -34.10 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.07 -5.71 -33.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821977450.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.379 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds