Wall clock time and date at job start Mon Mar 30 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00272 * 2 1 4 4 H 1.48497 * 109.46918 * 270.00541 * 3 2 1 5 5 H 1.48498 * 109.46736 * 30.00126 * 3 2 1 6 6 H 1.48500 * 109.47349 * 150.00245 * 3 2 1 7 7 C 1.37883 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.50699 * 110.56575 * 57.32010 * 9 7 2 11 11 O 1.20824 * 119.99766 * 122.68164 * 10 9 7 12 12 O 1.34226 * 119.99839 * 302.68102 * 10 9 7 13 13 C 1.54508 * 110.50778 * 294.64185 * 9 7 2 14 14 C 1.54480 * 104.06123 * 241.35688 * 13 9 7 15 15 O 1.44422 * 104.80389 * 23.98008 * 14 13 9 16 16 C 1.44427 * 105.27497 * 319.48863 * 15 14 13 17 17 H 1.09001 * 110.46136 * 281.63124 * 16 15 14 18 18 C 1.53002 * 110.36971 * 159.34336 * 16 15 14 19 19 C 1.53002 * 117.49773 * 69.62158 * 18 16 15 20 20 C 1.53000 * 60.02940 * 252.51785 * 19 18 16 21 21 H 0.96995 * 119.99712 * 359.97438 * 1 2 3 22 22 H 0.96702 * 116.99621 * 180.02562 * 12 10 9 23 23 H 1.09000 * 110.51509 * 0.02562 * 13 9 7 24 24 H 1.09000 * 110.51382 * 122.71297 * 13 9 7 25 25 H 1.09005 * 110.37505 * 142.81431 * 14 13 9 26 26 H 1.09004 * 110.37457 * 265.03425 * 14 13 9 27 27 H 1.09000 * 115.55766 * 215.30473 * 18 16 15 28 28 H 1.09002 * 117.49918 * 145.01819 * 19 18 16 29 29 H 1.09002 * 117.49754 * 0.02562 * 19 18 16 30 30 H 1.09008 * 117.49673 * 107.47884 * 20 19 18 31 31 H 1.08999 * 117.49942 * 252.47315 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 0.3261 -2.5765 -1.1878 11 8 0.4255 -3.4898 -1.9726 12 8 -0.6081 -1.6307 -1.3734 13 6 0.4583 -2.6666 1.3151 14 6 1.0555 -3.9401 1.9537 15 8 2.3809 -4.0487 1.3904 16 6 2.2334 -3.6914 -0.0012 17 1 1.8177 -4.5253 -0.5667 18 6 3.5818 -3.2701 -0.5887 19 6 4.6416 -4.3577 -0.7757 20 6 4.8012 -3.3179 0.3352 21 1 -0.4849 0.8400 0.0004 22 1 -1.1783 -1.7231 -2.1489 23 1 0.6111 -1.8052 1.9653 24 1 -0.6026 -2.8053 1.1068 25 1 1.1113 -3.8312 3.0369 26 1 0.4572 -4.8127 1.6913 27 1 3.5430 -2.4724 -1.3305 28 1 5.3001 -4.2754 -1.6405 29 1 4.3780 -5.3734 -0.4806 30 1 4.6423 -3.6495 1.3615 31 1 5.5650 -2.5518 0.2016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821977450.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:20 Heat of formation + Delta-G solvation = -113.574570 kcal Electronic energy + Delta-G solvation = -16842.503786 eV Core-core repulsion = 14089.769338 eV Total energy + Delta-G solvation = -2752.734448 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.47050 -39.67540 -37.20590 -36.48875 -35.22707 -32.46466 -30.18036 -26.88938 -25.19898 -23.41617 -23.02527 -21.52920 -20.94951 -18.80368 -18.15615 -17.47811 -16.83607 -16.45099 -16.04036 -15.88903 -15.45423 -15.22684 -14.58850 -14.05167 -13.19178 -13.13270 -12.87546 -12.78075 -12.51374 -12.34112 -12.21076 -11.96963 -11.92748 -11.62940 -11.43586 -11.03276 -10.90118 -10.62518 -10.35779 -10.26556 -8.01511 -6.20682 1.45247 1.48920 1.56314 1.77858 2.45506 2.75679 3.10782 3.19520 3.23633 3.88059 4.08523 4.24347 4.30199 4.33768 4.37100 4.61395 4.84957 4.85907 4.91894 4.98718 5.06197 5.16042 5.18729 5.39229 5.50193 5.59587 5.84978 5.93505 6.09019 6.22931 6.78595 7.44124 7.63146 8.94949 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.014216 C = 0.011647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.673361 B = 1969.127021 C = 2403.397980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.076 0.924 9 C 0.047 3.953 10 C 0.489 3.511 11 O -0.598 6.598 12 O -0.442 6.442 13 C -0.113 4.113 14 C 0.043 3.957 15 O -0.377 6.377 16 C 0.125 3.875 17 H 0.055 0.945 18 C -0.147 4.147 19 C -0.172 4.172 20 C -0.156 4.156 21 H 0.262 0.738 22 H 0.365 0.635 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 -3.508 1.528 4.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.210 1.210 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.563 4.563 8 H 0.094 0.906 9 C 0.045 3.955 10 C 0.336 3.664 11 O -0.495 6.495 12 O -0.245 6.245 13 C -0.151 4.151 14 C -0.034 4.034 15 O -0.296 6.296 16 C 0.067 3.933 17 H 0.073 0.927 18 C -0.165 4.165 19 C -0.209 4.209 20 C -0.193 4.193 21 H 0.072 0.928 22 H 0.220 0.780 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.126 0.874 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.904 -3.614 1.810 4.977 hybrid contribution -0.588 1.048 -0.869 1.483 sum 2.315 -2.566 0.942 3.582 Atomic orbital electron populations 1.69979 1.06031 1.26802 1.44710 1.25650 0.95740 1.01637 0.94966 0.85708 0.79064 0.80046 0.77763 1.20980 1.20900 1.19470 1.21148 0.93564 0.88427 1.53210 0.90577 1.19344 0.90711 0.96698 0.88701 1.25078 0.78062 0.76353 0.86926 1.90489 1.72630 1.37351 1.48982 1.85693 1.43565 1.48162 1.47106 1.22752 0.97933 0.97645 0.96818 1.23550 0.83725 0.96495 0.99612 1.88976 1.28670 1.89426 1.22527 1.22186 0.94430 0.94272 0.82391 0.92702 1.22094 0.89318 1.01696 1.03430 1.23073 1.01896 0.94916 1.01045 1.22777 0.98621 1.01679 0.96247 0.92788 0.78023 0.91521 0.93142 0.87419 0.92237 0.88141 0.87471 0.88961 0.88737 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.80 9.20 21.45 0.20 -42.61 16 2 C 0.03 1.27 4.97 84.66 0.42 1.69 16 3 Si 0.95 40.77 29.54 68.60 2.03 42.80 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.53 -26.63 6.93 25.60 0.18 -26.46 16 8 H 0.08 3.84 5.67 -2.91 -0.02 3.83 16 9 C 0.05 2.26 0.59 -52.66 -0.03 2.23 16 10 C 0.49 24.17 6.77 71.24 0.48 24.66 16 11 O -0.60 -30.67 16.21 21.97 0.36 -30.32 16 12 O -0.44 -20.71 9.63 -51.38 -0.49 -21.20 16 13 C -0.11 -4.96 5.63 31.61 0.18 -4.78 16 14 C 0.04 1.57 7.63 72.49 0.55 2.12 16 15 O -0.38 -15.53 9.77 -148.98 -1.46 -16.99 16 16 C 0.12 5.48 2.91 31.10 0.09 5.57 16 17 H 0.06 2.54 6.90 -2.39 -0.02 2.52 16 18 C -0.15 -5.96 4.06 -10.77 -0.04 -6.00 16 19 C -0.17 -5.59 10.25 30.60 0.31 -5.28 16 20 C -0.16 -5.41 9.81 30.62 0.30 -5.11 16 21 H 0.26 12.90 8.31 -92.71 -0.77 12.13 16 22 H 0.36 13.73 9.10 -74.06 -0.67 13.06 16 23 H 0.07 3.13 7.55 -2.39 -0.02 3.12 16 24 H 0.05 2.21 7.73 -2.39 -0.02 2.19 16 25 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 26 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.10 4.42 6.88 -2.39 -0.02 4.41 16 28 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.09 3.38 7.06 -2.38 -0.02 3.36 16 31 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -58.01 255.12 3.55 -54.47 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.48 Total: 25.20 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 2.44 Total: -11.36 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.20 Total: -42.61 kcal Atomic # 8 Polarization: -66.91 SS G_CDS: -1.59 Total: -68.50 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -58.01 3.55 -54.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821977450.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.109 kcal (2) G-P(sol) polarization free energy of solvation -58.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds