Wall clock time and date at job start Mon Mar 30 2020 03:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 110.33075 * 2 1 4 4 O 1.44423 * 110.37251 * 237.62791 * 2 1 3 5 5 C 1.44423 * 105.27351 * 200.65486 * 4 2 1 6 6 C 1.56634 * 105.08028 * 40.18962 * 5 4 2 7 7 H 1.09004 * 119.55600 * 196.83716 * 6 5 4 8 8 C 1.53001 * 116.74472 * 39.06915 * 6 5 4 9 9 C 1.53002 * 60.57503 * 269.98916 * 8 6 5 10 10 C 1.50700 * 119.80558 * 247.71316 * 9 8 6 11 11 O 1.21206 * 120.00132 * 70.23269 * 10 9 8 12 12 O 1.34314 * 120.00166 * 250.23976 * 10 9 8 13 13 C 1.34913 * 117.00115 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00285 * 359.97438 * 13 12 10 15 15 C 1.38760 * 120.00341 * 179.97438 * 13 12 10 16 16 N 1.31439 * 119.99536 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00255 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47111 * 59.99984 * 17 15 13 19 19 H 1.48506 * 109.47080 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47296 * 299.99735 * 17 15 13 21 21 H 1.09001 * 109.46861 * 297.75124 * 1 2 3 22 22 H 1.08996 * 109.47360 * 57.74900 * 1 2 3 23 23 H 1.09001 * 109.46887 * 177.75211 * 1 2 3 24 24 H 1.09000 * 109.46873 * 182.25428 * 3 2 1 25 25 H 1.09004 * 109.46626 * 302.24895 * 3 2 1 26 26 H 1.08998 * 109.47425 * 62.24703 * 3 2 1 27 27 H 1.08999 * 110.37179 * 159.34345 * 5 4 2 28 28 H 1.08998 * 110.37332 * 281.68070 * 5 4 2 29 29 H 1.09002 * 117.43560 * 162.33882 * 8 6 5 30 30 H 1.08998 * 117.42784 * 17.63859 * 8 6 5 31 31 H 0.97005 * 120.00253 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4347 0.0000 4 8 2.0328 -0.7249 -1.1435 5 6 3.3873 -1.0879 -0.7983 6 6 3.3258 -1.5040 0.7105 7 1 4.2467 -1.5585 1.2913 8 6 2.0978 -2.3008 1.1555 9 6 2.0679 -0.7727 1.2248 10 6 2.0270 -0.0842 2.5647 11 8 3.0005 -0.1047 3.2865 12 8 0.9118 0.5519 2.9592 13 6 0.9420 1.1478 4.1692 14 1 1.8363 1.0994 4.7729 15 6 -0.1757 1.8231 4.6383 16 7 -1.2639 1.8825 3.9034 17 14 -0.1341 2.6475 6.3139 18 1 0.9395 3.6734 6.3343 19 1 -1.4433 3.2965 6.5790 20 1 0.1348 1.6288 7.3604 21 1 -0.3633 0.4785 0.9095 22 1 -0.3634 0.5484 -0.8691 23 1 -0.3633 -1.0269 -0.0403 24 1 3.1507 1.4186 -0.0404 25 1 1.6736 1.9659 -0.8692 26 1 1.7391 1.9417 0.9094 27 1 3.7242 -1.9237 -1.4115 28 1 4.0525 -0.2333 -0.9218 29 1 2.1665 -2.8450 2.0974 30 1 1.5018 -2.7801 0.3788 31 1 -2.0453 2.3549 4.2311 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849932599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:43 Heat of formation + Delta-G solvation = -92.668121 kcal Electronic energy + Delta-G solvation = -16426.514633 eV Core-core repulsion = 13674.686757 eV Total energy + Delta-G solvation = -2751.827876 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.70339 -38.50960 -35.36660 -33.95581 -32.51276 -32.04988 -27.50246 -26.28041 -25.63459 -23.59325 -21.67989 -20.11048 -18.77610 -17.73723 -16.82536 -15.54185 -15.30914 -14.96473 -14.50316 -14.37552 -13.93242 -13.52275 -12.64469 -12.43942 -12.32510 -11.96249 -11.75970 -11.49581 -11.28284 -11.23338 -10.95444 -10.91408 -10.50964 -10.48607 -10.06564 -9.95545 -9.63356 -9.27481 -8.99002 -8.59455 -6.43701 -4.11063 3.05860 3.16939 3.20593 3.31308 3.76622 3.89092 4.08549 4.49756 4.72028 4.83826 5.04073 5.21034 5.24296 5.51184 5.55866 5.69943 5.73605 5.81157 5.95373 6.08623 6.20060 6.31055 6.35191 6.36860 6.56256 6.74241 6.94898 7.14160 7.37339 7.92432 8.66967 9.05273 9.84308 10.73890 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.042249 B = 0.008661 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.577954 B = 3231.949743 C = 3520.736932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.143 3.857 3 C -0.164 4.164 4 O -0.365 6.365 5 C 0.073 3.927 6 C -0.174 4.174 7 H 0.132 0.868 8 C -0.113 4.113 9 C -0.153 4.153 10 C 0.445 3.555 11 O -0.555 6.555 12 O -0.202 6.202 13 C -0.385 4.385 14 H 0.094 0.906 15 C 0.045 3.955 16 N -0.862 5.862 17 Si 0.942 3.058 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 H 0.100 0.900 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -3.949 -7.553 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.104 3.896 3 C -0.221 4.221 4 O -0.285 6.285 5 C -0.004 4.004 6 C -0.192 4.192 7 H 0.150 0.850 8 C -0.150 4.150 9 C -0.154 4.154 10 C 0.291 3.709 11 O -0.452 6.452 12 O -0.108 6.108 13 C -0.461 4.461 14 H 0.111 0.889 15 C -0.159 4.159 16 N -0.498 5.498 17 Si 0.767 3.233 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 H 0.118 0.882 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.092 -3.868 -7.553 9.420 hybrid contribution 0.221 0.466 1.115 1.228 sum 4.312 -3.402 -6.438 8.463 Atomic orbital electron populations 1.21803 0.91114 1.02626 1.04047 1.21691 0.95727 0.90714 0.81466 1.22177 1.00927 0.95316 1.03700 1.89156 1.26678 1.74239 1.38400 1.23250 0.85352 0.99455 0.92375 1.24582 0.93966 1.04058 0.96583 0.85028 1.22888 0.98543 0.90510 1.03042 1.22303 1.04575 0.94812 0.93743 1.21422 0.82809 0.80391 0.86278 1.90552 1.37107 1.61890 1.55682 1.83853 1.34517 1.57047 1.35400 1.21182 1.01154 1.31907 0.91866 0.88874 1.25292 0.94255 0.96748 0.99652 1.69967 1.02713 1.39994 1.37138 0.85769 0.77778 0.79311 0.80475 1.19517 1.20326 1.19523 0.88171 0.92466 0.92344 0.92672 0.91610 0.90005 0.88731 0.91470 0.87562 0.87754 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.95 37.16 0.33 -2.22 16 2 C 0.14 2.62 0.97 -89.84 -0.09 2.53 16 3 C -0.16 -2.95 8.47 37.16 0.31 -2.64 16 4 O -0.37 -6.07 10.75 -35.23 -0.38 -6.45 16 5 C 0.07 1.02 7.16 39.12 0.28 1.30 16 6 C -0.17 -2.81 7.10 -87.96 -0.62 -3.43 16 7 H 0.13 2.09 8.14 -51.93 -0.42 1.67 16 8 C -0.11 -1.87 9.68 -26.73 -0.26 -2.12 16 9 C -0.15 -3.03 1.94 -154.19 -0.30 -3.33 16 10 C 0.44 11.19 6.51 36.01 0.23 11.43 16 11 O -0.55 -15.19 16.08 -19.05 -0.31 -15.50 16 12 O -0.20 -5.65 8.11 -20.69 -0.17 -5.82 16 13 C -0.38 -11.24 9.65 30.93 0.30 -10.94 16 14 H 0.09 2.76 6.86 -52.49 -0.36 2.40 16 15 C 0.05 1.25 5.49 -17.53 -0.10 1.15 16 16 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 17 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H 0.10 2.17 6.88 -51.93 -0.36 1.81 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.93 6.95 -51.93 -0.36 0.56 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 1.71 7.24 -51.93 -0.38 1.33 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.88 7.24 -51.93 -0.38 0.51 16 29 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 30 H 0.10 1.54 8.04 -51.93 -0.42 1.12 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 265.75 15.07 4.00 4.00 Total: -1.00 -31.62 265.75 -4.94 -36.56 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.92 Total: 3.16 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.76 Total: -23.77 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.85 Total: -27.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.62 -4.94 -36.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849932599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.108 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds