Wall clock time and date at job start Mon Mar 30 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48494 * 109.47401 * 94.81718 * 3 2 1 5 5 H 1.48495 * 109.46695 * 214.82056 * 3 2 1 6 6 H 1.48501 * 109.46914 * 334.81510 * 3 2 1 7 7 C 1.37876 * 119.99931 * 180.26976 * 2 1 3 8 8 H 1.08003 * 120.00045 * 356.21419 * 7 2 1 9 9 C 1.50702 * 119.99999 * 176.21608 * 7 2 1 10 10 C 1.52999 * 112.99865 * 284.01890 * 9 7 2 11 11 O 1.45197 * 109.47307 * 294.05956 * 10 9 7 12 12 C 1.34223 * 117.00263 * 182.76822 * 11 10 9 13 13 O 1.20823 * 120.00083 * 5.10048 * 12 11 10 14 14 C 1.50705 * 120.00239 * 185.09259 * 12 11 10 15 15 C 1.52999 * 117.50102 * 223.77078 * 14 12 11 16 16 C 1.53003 * 117.49790 * 155.14671 * 14 12 11 17 17 C 1.54039 * 113.81500 * 152.03278 * 9 7 2 18 18 O 1.44180 * 85.51505 * 223.19610 * 17 9 7 19 19 C 1.44173 * 93.34293 * 24.19281 * 18 17 9 20 20 H 0.96991 * 120.00141 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46818 * 54.06058 * 10 9 7 22 22 H 1.09003 * 109.47013 * 174.05894 * 10 9 7 23 23 H 1.09000 * 115.54874 * 9.48365 * 14 12 11 24 24 H 1.09007 * 117.49792 * 359.97438 * 15 14 12 25 25 H 1.08988 * 117.49927 * 145.02186 * 15 14 12 26 26 H 1.08998 * 117.49848 * 214.98316 * 16 14 12 27 27 H 1.09004 * 117.49803 * 359.97438 * 16 14 12 28 28 H 1.08999 * 113.86464 * 337.34319 * 17 9 7 29 29 H 1.08997 * 113.86170 * 109.05269 * 17 9 7 30 30 H 1.08997 * 113.86773 * 221.66093 * 19 18 17 31 31 H 1.09001 * 113.86553 * 89.95096 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5985 1.9877 1.3950 5 1 3.4920 1.4717 -0.7994 6 1 1.3994 2.6799 -0.5958 7 6 2.0046 -1.1940 -0.0056 8 1 1.4663 -2.1286 0.0517 9 6 3.5091 -1.1951 -0.0918 10 6 4.0275 -0.8931 -1.4992 11 8 3.6503 -1.9713 -2.3956 12 6 4.0803 -1.8876 -3.6644 13 8 4.8252 -0.9945 -3.9921 14 6 3.6342 -2.9076 -4.6801 15 6 4.6942 -3.4696 -5.6295 16 6 3.6420 -2.4893 -6.1518 17 6 4.1690 -2.4210 0.5674 18 8 5.1153 -1.4781 1.1100 19 6 4.1960 -0.3717 1.0141 20 1 -0.4850 0.8400 -0.0004 21 1 3.5939 0.0422 -1.8532 22 1 5.1136 -0.8039 -1.4750 23 1 2.8429 -3.5820 -4.3528 24 1 5.7143 -3.1013 -5.5197 25 1 4.6006 -4.5140 -5.9268 26 1 2.8561 -2.8888 -6.7927 27 1 3.9694 -1.4761 -6.3853 28 1 3.5472 -2.9047 1.3207 29 1 4.6043 -3.1230 -0.1436 30 1 4.6527 0.5515 0.6573 31 1 3.5825 -0.2297 1.9037 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345269249.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:30 Heat of formation + Delta-G solvation = -86.031101 kcal Electronic energy + Delta-G solvation = -15973.625883 eV Core-core repulsion = 13222.085810 eV Total energy + Delta-G solvation = -2751.540073 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.88045 -41.09845 -38.18379 -36.79363 -34.99300 -32.43201 -28.10006 -27.58525 -26.25611 -25.31172 -23.39215 -21.31631 -20.66884 -19.18542 -18.79503 -17.87744 -17.49753 -16.96996 -16.69420 -16.24989 -15.73806 -15.34095 -14.85841 -14.68464 -14.33808 -13.57307 -13.44348 -12.91651 -12.79932 -12.68813 -12.46453 -12.20516 -11.76280 -11.69915 -11.58195 -11.49379 -11.13734 -11.01034 -10.85643 -10.42085 -8.36594 -6.41972 1.00952 1.25225 1.28479 1.33837 1.66718 2.24145 2.82223 2.85417 2.98507 3.47364 3.65586 3.88238 3.94354 3.96185 4.14900 4.19096 4.33087 4.39407 4.51031 4.64991 4.68705 4.86569 4.97169 4.98357 5.17165 5.19578 5.22585 5.47375 5.53635 6.19331 6.61614 6.73948 7.22968 8.79285 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.009389 C = 0.008231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.526203 B = 2981.654067 C = 3400.860832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.028 3.972 3 Si 0.906 3.094 4 H -0.247 1.247 5 H -0.242 1.242 6 H -0.291 1.291 7 C -0.504 4.504 8 H 0.048 0.952 9 C -0.031 4.031 10 C 0.095 3.905 11 O -0.342 6.342 12 C 0.477 3.523 13 O -0.552 6.552 14 C -0.195 4.195 15 C -0.125 4.125 16 C -0.138 4.138 17 C 0.059 3.941 18 O -0.398 6.398 19 C 0.033 3.967 20 H 0.268 0.732 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.147 0.853 24 H 0.094 0.906 25 H 0.144 0.856 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.002 -4.996 -8.257 12.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.171 4.171 3 Si 0.731 3.269 4 H -0.172 1.172 5 H -0.166 1.166 6 H -0.218 1.218 7 C -0.541 4.541 8 H 0.066 0.934 9 C -0.032 4.032 10 C 0.021 3.979 11 O -0.257 6.257 12 C 0.323 3.677 13 O -0.444 6.444 14 C -0.214 4.214 15 C -0.162 4.162 16 C -0.174 4.174 17 C -0.018 4.018 18 O -0.317 6.317 19 C -0.044 4.044 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.165 0.835 24 H 0.112 0.888 25 H 0.162 0.838 26 H 0.158 0.842 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.331 -4.645 -8.194 12.575 hybrid contribution -0.342 1.215 0.231 1.283 sum 7.989 -3.429 -7.963 11.790 Atomic orbital electron populations 1.70006 1.07889 1.28110 1.51486 1.25670 0.95273 1.02187 0.93969 0.86580 0.79785 0.79949 0.80609 1.17161 1.16649 1.21775 1.20829 0.89343 0.93652 1.50314 0.93385 1.21484 0.96006 0.95470 0.90233 1.23155 0.97991 0.87639 0.89077 1.86487 1.70371 1.48039 1.20837 1.23534 0.76643 0.84879 0.82594 1.90574 1.36275 1.36917 1.80671 1.21904 1.07437 1.02010 0.90015 1.23198 0.94318 1.01427 0.97235 1.23212 1.02741 1.01046 0.90438 1.23941 0.88762 0.92913 0.96160 1.89483 1.33970 1.20823 1.87412 1.24351 0.90112 0.91484 0.98466 0.92310 0.92793 0.92062 0.83516 0.88768 0.83797 0.84212 0.89096 0.89503 0.88876 0.89578 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 13.96 21.45 0.30 -55.91 16 2 C 0.03 1.55 5.47 84.65 0.46 2.01 16 3 Si 0.91 41.53 23.67 68.60 1.62 43.15 16 4 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.24 -10.42 4.78 99.48 0.48 -9.94 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 7 C -0.50 -27.32 8.87 25.60 0.23 -27.09 16 8 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 9 C -0.03 -1.40 0.44 -52.23 -0.02 -1.43 16 10 C 0.10 4.25 4.28 71.98 0.31 4.56 16 11 O -0.34 -14.67 9.99 -51.35 -0.51 -15.18 16 12 C 0.48 18.01 7.71 71.24 0.55 18.56 16 13 O -0.55 -23.12 16.12 21.97 0.35 -22.77 16 14 C -0.19 -5.14 6.30 -11.54 -0.07 -5.22 16 15 C -0.13 -2.35 10.14 30.60 0.31 -2.04 16 16 C -0.14 -2.80 10.05 30.60 0.31 -2.50 16 17 C 0.06 2.34 8.29 72.28 0.60 2.94 16 18 O -0.40 -16.29 12.37 -148.98 -1.84 -18.14 16 19 C 0.03 1.35 5.71 72.28 0.41 1.77 16 20 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 21 H 0.05 2.56 5.43 -2.39 -0.01 2.54 16 22 H 0.06 2.60 7.96 -2.39 -0.02 2.58 16 23 H 0.15 3.47 8.14 -2.39 -0.02 3.45 16 24 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.09 2.15 7.89 -2.39 -0.02 2.14 16 28 H 0.09 3.36 8.09 -2.39 -0.02 3.34 16 29 H 0.09 3.39 8.06 -2.39 -0.02 3.37 16 30 H 0.09 3.32 6.48 -2.39 -0.02 3.30 16 31 H 0.09 3.73 7.75 -2.39 -0.02 3.71 16 Total: -1.00 -66.47 262.98 3.90 -62.57 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.89 Total: 14.70 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 3.08 Total: -8.43 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.30 Total: -55.91 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -2.00 Total: -56.08 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.62 Total: 43.15 kcal Total: -66.47 3.90 -62.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345269249.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.458 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds