Wall clock time and date at job start Mon Mar 30 2020 03:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47180 * 264.57469 * 3 2 1 5 5 H 1.48499 * 109.47150 * 24.58067 * 3 2 1 6 6 H 1.48505 * 109.46784 * 144.57655 * 3 2 1 7 7 C 1.38810 * 119.99255 * 179.72209 * 2 1 3 8 8 H 1.08007 * 119.99477 * 197.92972 * 7 2 1 9 9 N 1.36937 * 120.00553 * 17.93393 * 7 2 1 10 10 C 1.46831 * 120.38898 * 27.37097 * 9 7 2 11 11 C 1.53387 * 109.31151 * 127.80198 * 10 9 7 12 12 C 1.52782 * 108.74116 * 53.73130 * 11 10 9 13 13 H 1.08997 * 109.38730 * 57.08398 * 12 11 10 14 14 O 1.42759 * 111.19583 * 178.01975 * 12 11 10 15 15 C 1.43118 * 112.67442 * 188.34357 * 14 12 11 16 16 C 1.50246 * 110.48391 * 312.95507 * 15 14 12 17 17 O 1.21282 * 118.61889 * 194.05767 * 16 15 14 18 18 N 1.34152 * 122.75757 * 14.07580 * 16 15 14 19 19 C 1.45737 * 121.57573 * 356.77967 * 18 16 15 20 20 H 1.09004 * 109.24011 * 262.44013 * 19 18 16 21 21 C 1.47163 * 120.39173 * 207.09618 * 9 7 2 22 22 H 0.97001 * 119.99813 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.49644 * 247.75559 * 10 9 7 24 24 H 1.09007 * 109.49692 * 7.81933 * 10 9 7 25 25 H 1.09002 * 109.59649 * 173.50465 * 11 10 9 26 26 H 1.09008 * 109.59470 * 293.95594 * 11 10 9 27 27 H 1.09004 * 109.29322 * 73.26495 * 15 14 12 28 28 H 1.09003 * 109.30017 * 192.63942 * 15 14 12 29 29 H 0.97001 * 119.21226 * 176.79272 * 18 16 15 30 30 H 1.09005 * 109.74650 * 352.71096 * 21 9 7 31 31 H 1.08997 * 109.74792 * 113.43144 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6124 1.9802 -1.3938 5 1 1.3952 2.6830 0.5824 6 1 3.4859 1.4759 0.8115 7 6 2.0102 -1.2022 0.0058 8 1 3.0509 -1.2236 0.2939 9 7 1.3753 -2.3610 -0.3537 10 6 0.2359 -2.3274 -1.2792 11 6 0.4844 -3.3155 -2.4258 12 6 0.7934 -4.6889 -1.8321 13 1 -0.0314 -4.9997 -1.1908 14 8 0.9893 -5.6624 -2.8577 15 6 1.0916 -6.9937 -2.3425 16 6 2.0354 -7.0342 -1.1742 17 8 2.4338 -8.1120 -0.7863 18 7 2.4556 -5.9282 -0.5418 19 6 2.0727 -4.5974 -0.9960 20 1 2.8731 -4.1829 -1.6090 21 6 1.8309 -3.6554 0.1782 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6731 -2.6084 -0.7473 24 1 0.1248 -1.3211 -1.6830 25 1 -0.4053 -3.3799 -3.0522 26 1 1.3309 -2.9767 -3.0232 27 1 0.1064 -7.3325 -2.0218 28 1 1.4596 -7.6560 -3.1262 29 1 3.0281 -6.0163 0.2363 30 1 2.7576 -3.5189 0.7357 31 1 1.0658 -4.0749 0.8314 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618361543.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:55 Heat of formation + Delta-G solvation = -76.636636 kcal Electronic energy + Delta-G solvation = -16272.292154 eV Core-core repulsion = 13553.452206 eV Total energy + Delta-G solvation = -2718.839948 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82738 -39.44538 -37.86065 -35.85680 -34.08652 -32.12733 -30.43979 -28.66684 -26.82423 -24.38208 -23.90155 -21.61231 -20.78404 -19.01401 -18.63981 -17.90590 -16.77857 -16.65011 -16.36288 -15.98654 -15.82180 -15.40413 -15.00557 -14.68338 -14.22279 -13.66021 -13.50184 -12.95979 -12.83659 -12.66707 -12.35389 -12.25583 -11.96304 -11.66444 -11.58069 -11.49502 -10.68793 -10.46235 -10.19530 -8.79843 -7.92103 -5.37031 1.35485 1.50114 1.52371 1.59403 1.99436 2.49696 2.61830 3.23261 3.27973 3.56332 3.68951 3.88769 4.02491 4.22652 4.32210 4.41376 4.50118 4.73128 4.79793 4.82946 5.02121 5.09222 5.42917 5.52423 5.62228 5.69503 5.91868 6.13652 6.34807 6.97124 7.10608 7.77416 8.26789 9.15630 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.053650 B = 0.007400 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.772869 B = 3782.761756 C = 4077.898247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.270 4.270 8 H 0.071 0.929 9 N -0.604 5.604 10 C 0.177 3.823 11 C -0.116 4.116 12 C 0.089 3.911 13 H 0.067 0.933 14 O -0.374 6.374 15 C 0.049 3.951 16 C 0.490 3.510 17 O -0.589 6.589 18 N -0.703 5.703 19 C 0.105 3.895 20 H 0.076 0.924 21 C 0.144 3.856 22 H 0.252 0.748 23 H 0.009 0.991 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.151 0.849 29 H 0.405 0.595 30 H 0.069 0.931 31 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.114 -8.585 -4.556 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.794 3.206 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.399 4.399 8 H 0.089 0.911 9 N -0.328 5.328 10 C 0.052 3.948 11 C -0.156 4.156 12 C 0.031 3.969 13 H 0.085 0.915 14 O -0.293 6.293 15 C -0.029 4.029 16 C 0.278 3.722 17 O -0.470 6.470 18 N -0.355 5.355 19 C -0.002 4.002 20 H 0.094 0.906 21 C 0.017 3.983 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.168 0.832 29 H 0.242 0.758 30 H 0.088 0.912 31 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.095 -8.908 -4.714 10.138 hybrid contribution 0.485 0.999 0.852 1.400 sum 1.580 -7.908 -3.862 8.942 Atomic orbital electron populations 1.70164 1.06540 1.26175 1.54668 1.25730 0.95999 1.01341 1.00759 0.85316 0.77957 0.79495 0.77824 1.20967 1.22279 1.19578 1.19500 0.93391 0.85650 1.41390 0.91148 1.44243 1.36222 1.01513 1.50830 1.20683 0.88040 0.97817 0.88291 1.22067 1.02710 0.91571 0.99235 1.22236 0.95234 0.90403 0.89034 0.91518 1.88125 1.93483 1.15226 1.32418 1.22948 0.99183 0.85781 0.95037 1.21536 0.81845 0.83292 0.85577 1.90735 1.58934 1.29258 1.68113 1.45700 1.51409 1.05683 1.32677 1.21967 0.98143 0.82262 0.97836 0.90626 1.21043 0.98823 0.85668 0.92792 0.93838 0.97315 0.91482 0.89293 0.91593 0.87066 0.83172 0.75759 0.91211 0.95631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.75 11.21 21.65 0.24 -51.51 16 2 C -0.04 -2.21 4.88 84.86 0.41 -1.79 16 3 Si 0.97 42.53 29.59 68.60 2.03 44.56 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.27 -13.80 9.57 84.03 0.80 -13.00 16 8 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 9 N -0.60 -27.76 3.01 -699.74 -2.11 -29.87 16 10 C 0.18 7.74 5.25 86.45 0.45 8.19 16 11 C -0.12 -3.95 5.83 30.65 0.18 -3.77 16 12 C 0.09 2.73 2.39 30.56 0.07 2.81 16 13 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 14 O -0.37 -10.37 10.59 -148.98 -1.58 -11.95 16 15 C 0.05 1.14 6.95 71.09 0.49 1.63 16 16 C 0.49 14.17 7.81 87.61 0.68 14.85 16 17 O -0.59 -20.43 17.84 -3.04 -0.05 -20.49 16 18 N -0.70 -19.94 5.31 -446.09 -2.37 -22.31 16 19 C 0.11 3.31 3.14 44.99 0.14 3.45 16 20 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 21 C 0.14 5.33 6.15 86.07 0.53 5.86 16 22 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 23 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.07 3.34 6.07 -2.38 -0.01 3.33 16 25 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.41 10.62 8.80 -92.71 -0.82 9.80 16 30 H 0.07 2.50 7.93 -2.38 -0.02 2.48 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -60.87 254.92 0.26 -60.61 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.32 Total: 12.72 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 3.77 Total: 18.23 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -4.24 Total: -103.68 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.63 Total: -32.44 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -60.87 0.26 -60.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618361543.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.030 kcal (2) G-P(sol) polarization free energy of solvation -60.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds