Wall clock time and date at job start Mon Mar 30 2020 03:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00427 * 2 1 4 4 H 1.48497 * 109.47103 * 269.99515 * 3 2 1 5 5 H 1.48503 * 109.47193 * 29.99465 * 3 2 1 6 6 H 1.48499 * 109.47329 * 149.99352 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93456 * 309.66590 * 9 7 2 11 11 C 1.53932 * 113.73345 * 81.23268 * 9 7 2 12 12 N 1.48304 * 86.06231 * 138.13032 * 11 9 7 13 13 C 1.46896 * 111.00332 * 222.41853 * 12 11 9 14 14 H 1.08996 * 110.43870 * 48.26647 * 13 12 11 15 15 C 1.54625 * 110.48541 * 285.57683 * 13 12 11 16 16 C 1.54479 * 101.76705 * 266.12140 * 15 13 12 17 17 N 1.46764 * 105.47444 * 334.58658 * 16 15 13 18 18 C 1.34421 * 111.29974 * 17.01260 * 17 16 15 19 19 O 1.21284 * 124.94214 * 179.55560 * 18 17 16 20 20 C 1.47962 * 90.75276 * 335.30996 * 12 11 9 21 21 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 22 22 H 0.96700 * 114.00311 * 50.33594 * 10 9 7 23 23 H 1.09004 * 113.75677 * 252.50317 * 11 9 7 24 24 H 1.09000 * 113.76003 * 23.86640 * 11 9 7 25 25 H 1.08998 * 110.97042 * 24.24561 * 15 13 12 26 26 H 1.09002 * 110.96425 * 148.00596 * 15 13 12 27 27 H 1.08999 * 110.24641 * 215.58811 * 16 15 13 28 28 H 1.09000 * 110.31972 * 93.62734 * 16 15 13 29 29 H 0.96999 * 124.34843 * 197.03628 * 17 16 15 30 30 H 1.08997 * 113.75944 * 270.36826 * 20 12 11 31 31 H 1.09001 * 113.85960 * 139.01471 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.2446 -2.5611 1.0132 11 6 0.7557 -2.9286 -1.3922 12 7 1.1877 -4.2954 -1.0119 13 6 1.8744 -4.9601 -2.1274 14 1 2.6283 -4.3007 -2.5574 15 6 0.8563 -5.3984 -3.2056 16 6 0.5636 -6.8566 -2.7882 17 7 1.7538 -7.2998 -2.0527 18 6 2.5053 -6.2549 -1.6647 19 8 3.5383 -6.3381 -1.0347 20 6 2.1608 -3.7400 -0.0455 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3474 -1.7966 1.0268 23 1 -0.3215 -2.8278 -1.5256 24 1 1.3291 -2.4995 -2.2139 25 1 -0.0472 -4.7904 -3.1590 26 1 1.3004 -5.3590 -4.2002 27 1 0.4124 -7.4784 -3.6706 28 1 -0.3147 -6.8969 -2.1439 29 1 1.9706 -8.2275 -1.8703 30 1 3.1443 -3.5477 -0.4741 31 1 2.2070 -4.2859 0.8968 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654251107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:46 Heat of formation + Delta-G solvation = -44.485301 kcal Electronic energy + Delta-G solvation = -16152.064542 eV Core-core repulsion = 13434.618781 eV Total energy + Delta-G solvation = -2717.445761 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.37841 -38.29242 -36.07475 -34.11911 -32.08475 -30.71238 -27.94706 -26.19026 -25.10923 -23.39624 -21.40062 -19.84267 -18.66482 -17.32145 -17.14071 -16.09151 -15.17713 -15.01229 -14.51822 -13.96445 -13.78917 -13.61532 -13.10459 -12.88076 -12.33905 -12.03816 -11.80767 -11.43443 -11.34774 -11.00924 -10.96439 -10.52021 -10.41434 -10.09247 -9.50448 -9.25197 -8.95469 -8.64665 -8.27269 -7.87901 -6.26383 -4.35766 2.82250 3.19933 3.27755 3.32438 3.52733 4.26280 4.56110 4.61141 4.77251 4.99065 5.06701 5.36867 5.53891 5.75285 5.84481 5.93729 6.03849 6.18819 6.31107 6.37976 6.73855 6.90611 6.98639 7.11358 7.14086 7.35115 7.75880 7.85618 8.01189 8.47547 8.66811 9.34364 9.61858 10.79577 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.046083 B = 0.007464 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.455249 B = 3750.191529 C = 3872.324389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.244 3.756 10 O -0.571 6.571 11 C -0.009 4.009 12 N -0.462 5.462 13 C 0.012 3.988 14 H 0.077 0.923 15 C -0.126 4.126 16 C 0.110 3.890 17 N -0.732 5.732 18 C 0.534 3.466 19 O -0.534 6.534 20 C 0.016 3.984 21 H 0.270 0.730 22 H 0.388 0.612 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.405 0.595 30 H 0.071 0.929 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -8.645 -7.562 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.202 3.798 10 O -0.382 6.382 11 C -0.137 4.137 12 N -0.187 5.187 13 C -0.101 4.101 14 H 0.095 0.905 15 C -0.164 4.164 16 C -0.014 4.014 17 N -0.388 5.388 18 C 0.319 3.681 19 O -0.409 6.409 20 C -0.112 4.112 21 H 0.080 0.920 22 H 0.242 0.758 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.243 0.757 30 H 0.089 0.911 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.863 -9.503 -6.921 11.787 hybrid contribution 0.794 1.467 -0.592 1.770 sum -0.069 -8.036 -7.513 11.001 Atomic orbital electron populations 1.69427 1.06056 1.27776 1.50583 1.25053 0.94996 0.99610 0.93415 0.86416 0.79939 0.82391 0.78243 1.20467 1.20921 1.19642 1.21657 0.93790 0.90600 1.51472 0.91567 1.19763 0.85392 0.90967 0.83655 1.86060 1.46998 1.49476 1.55630 1.24808 1.00833 0.86104 1.02000 1.68783 1.25313 1.17157 1.07480 1.22981 0.96843 0.95049 0.95201 0.90501 1.22606 1.00729 0.95520 0.97526 1.21973 0.88183 0.95488 0.95766 1.46131 1.25337 1.08867 1.58425 1.20799 0.82895 0.86840 0.77549 1.90714 1.23646 1.86808 1.39748 1.24117 0.94871 0.96095 0.96152 0.91955 0.75842 0.90492 0.91883 0.88549 0.90315 0.90908 0.90738 0.75699 0.91131 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.74 11.20 55.43 0.62 -23.12 16 2 C 0.07 1.87 5.40 -17.82 -0.10 1.77 16 3 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.41 8.61 -34.44 -0.30 -14.71 16 8 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.24 6.20 1.40 -90.84 -0.13 6.07 16 10 O -0.57 -15.42 13.48 -35.23 -0.48 -15.90 16 11 C -0.01 -0.20 6.70 -2.57 -0.02 -0.21 16 12 N -0.46 -9.59 6.00 -229.95 -1.38 -10.97 16 13 C 0.01 0.20 2.21 -67.73 -0.15 0.05 16 14 H 0.08 1.36 7.78 -51.93 -0.40 0.96 16 15 C -0.13 -1.60 6.73 -25.10 -0.17 -1.77 16 16 C 0.11 1.21 7.78 -3.12 -0.02 1.19 16 17 N -0.73 -9.73 6.24 -59.20 -0.37 -10.10 16 18 C 0.53 9.49 7.68 -10.86 -0.08 9.41 16 19 O -0.53 -11.44 17.76 5.55 0.10 -11.34 16 20 C 0.02 0.37 6.74 -2.76 -0.02 0.36 16 21 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 22 H 0.39 10.53 6.60 45.56 0.30 10.83 16 23 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 24 H 0.06 1.37 7.74 -51.93 -0.40 0.97 16 25 H 0.10 1.25 7.57 -51.93 -0.39 0.86 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.41 4.46 8.96 -40.82 -0.37 4.09 16 30 H 0.07 1.62 7.78 -51.93 -0.40 1.22 16 31 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 262.05 15.07 3.95 3.95 Total: -1.00 -30.21 262.05 -6.88 -37.10 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -3.33 Total: 12.86 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.98 Total: 2.16 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -1.13 Total: -44.19 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.38 Total: -27.24 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.21 -6.88 -37.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.388 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds