Wall clock time and date at job start Mon Mar 30 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00427 * 2 1 4 4 H 1.48497 * 109.47103 * 269.99515 * 3 2 1 5 5 H 1.48503 * 109.47193 * 29.99465 * 3 2 1 6 6 H 1.48499 * 109.47329 * 149.99352 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93456 * 309.66590 * 9 7 2 11 11 C 1.53932 * 113.73345 * 81.23268 * 9 7 2 12 12 N 1.48304 * 86.06231 * 138.13032 * 11 9 7 13 13 C 1.46896 * 111.00332 * 222.41853 * 12 11 9 14 14 H 1.08996 * 110.43870 * 48.26647 * 13 12 11 15 15 C 1.54625 * 110.48541 * 285.57683 * 13 12 11 16 16 C 1.54479 * 101.76705 * 266.12140 * 15 13 12 17 17 N 1.46764 * 105.47444 * 334.58658 * 16 15 13 18 18 C 1.34421 * 111.29974 * 17.01260 * 17 16 15 19 19 O 1.21284 * 124.94214 * 179.55560 * 18 17 16 20 20 C 1.47962 * 90.75276 * 335.30996 * 12 11 9 21 21 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 22 22 H 0.96700 * 114.00311 * 50.33594 * 10 9 7 23 23 H 1.09004 * 113.75677 * 252.50317 * 11 9 7 24 24 H 1.09000 * 113.76003 * 23.86640 * 11 9 7 25 25 H 1.08998 * 110.97042 * 24.24561 * 15 13 12 26 26 H 1.09002 * 110.96425 * 148.00596 * 15 13 12 27 27 H 1.08999 * 110.24641 * 215.58811 * 16 15 13 28 28 H 1.09000 * 110.31972 * 93.62734 * 16 15 13 29 29 H 0.96999 * 124.34843 * 197.03628 * 17 16 15 30 30 H 1.08997 * 113.75944 * 270.36826 * 20 12 11 31 31 H 1.09001 * 113.85960 * 139.01471 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.2446 -2.5611 1.0132 11 6 0.7557 -2.9286 -1.3922 12 7 1.1877 -4.2954 -1.0119 13 6 1.8744 -4.9601 -2.1274 14 1 2.6283 -4.3007 -2.5574 15 6 0.8563 -5.3984 -3.2056 16 6 0.5636 -6.8566 -2.7882 17 7 1.7538 -7.2998 -2.0527 18 6 2.5053 -6.2549 -1.6647 19 8 3.5383 -6.3381 -1.0347 20 6 2.1608 -3.7400 -0.0455 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3474 -1.7966 1.0268 23 1 -0.3215 -2.8278 -1.5256 24 1 1.3291 -2.4995 -2.2139 25 1 -0.0472 -4.7904 -3.1590 26 1 1.3004 -5.3590 -4.2002 27 1 0.4124 -7.4784 -3.6706 28 1 -0.3147 -6.8969 -2.1439 29 1 1.9706 -8.2275 -1.8703 30 1 3.1443 -3.5477 -0.4741 31 1 2.2070 -4.2859 0.8968 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654251107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:45 Heat of formation + Delta-G solvation = -71.666183 kcal Electronic energy + Delta-G solvation = -16153.243193 eV Core-core repulsion = 13434.618781 eV Total energy + Delta-G solvation = -2718.624413 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.80748 -39.97289 -37.42674 -36.00339 -34.13422 -32.06535 -29.40196 -27.89631 -26.91014 -25.06732 -22.55484 -21.24431 -20.56387 -19.21913 -18.42819 -17.58140 -17.12055 -16.54870 -16.16261 -15.50368 -15.22442 -15.18380 -14.65767 -14.27669 -13.95033 -13.79254 -13.39109 -13.16753 -12.83552 -12.75483 -12.42494 -12.27515 -12.18216 -11.93541 -11.23531 -10.85034 -10.64644 -10.19896 -10.05529 -9.69506 -8.25471 -6.42977 1.41202 1.41908 1.44843 1.54440 2.37470 2.41453 2.95351 3.11070 3.30587 3.56783 3.95668 4.02992 4.16030 4.32689 4.40470 4.51929 4.59317 4.77195 4.83310 4.96452 5.11555 5.14453 5.30710 5.38943 5.73072 5.84257 5.98161 5.98891 6.15655 6.60941 7.22302 7.29810 7.51389 8.79556 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.046083 B = 0.007464 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.455249 B = 3750.191529 C = 3872.324389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.033 3.967 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.566 4.566 8 H 0.057 0.943 9 C 0.220 3.780 10 O -0.583 6.583 11 C 0.010 3.990 12 N -0.457 5.457 13 C 0.001 3.999 14 H 0.070 0.930 15 C -0.118 4.118 16 C 0.110 3.890 17 N -0.713 5.713 18 C 0.524 3.476 19 O -0.582 6.582 20 C 0.021 3.979 21 H 0.275 0.725 22 H 0.383 0.617 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.418 0.582 30 H 0.067 0.933 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -9.117 -9.288 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.167 4.167 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.604 4.604 8 H 0.075 0.925 9 C 0.179 3.821 10 O -0.394 6.394 11 C -0.119 4.119 12 N -0.182 5.182 13 C -0.111 4.111 14 H 0.088 0.912 15 C -0.156 4.156 16 C -0.014 4.014 17 N -0.368 5.368 18 C 0.309 3.691 19 O -0.461 6.461 20 C -0.108 4.108 21 H 0.085 0.915 22 H 0.237 0.763 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.138 0.862 28 H 0.094 0.906 29 H 0.258 0.742 30 H 0.085 0.915 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.540 -10.018 -8.675 13.341 hybrid contribution 0.958 1.558 -0.061 1.830 sum -0.582 -8.460 -8.736 12.175 Atomic orbital electron populations 1.69483 1.06900 1.28741 1.50171 1.25730 0.95856 1.02377 0.92764 0.85457 0.78456 0.78585 0.78526 1.19505 1.20251 1.20061 1.21848 0.93628 0.91957 1.52920 0.92470 1.20098 0.85707 0.91369 0.84972 1.86042 1.47333 1.49264 1.56741 1.24502 1.00495 0.86754 1.00101 1.68643 1.24833 1.16274 1.08417 1.23113 0.98080 0.94677 0.95235 0.91241 1.22688 0.99313 0.96342 0.97235 1.22239 0.86801 0.95066 0.97260 1.46098 1.24959 1.08752 1.56944 1.20918 0.82733 0.87979 0.77440 1.90685 1.25828 1.87520 1.42057 1.23949 0.94969 0.95468 0.96420 0.91497 0.76329 0.90724 0.91533 0.88589 0.87316 0.86211 0.90577 0.74154 0.91502 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.08 11.20 21.45 0.24 -47.84 16 2 C 0.03 1.74 5.40 84.66 0.46 2.20 16 3 Si 0.96 41.58 29.54 68.60 2.03 43.60 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.57 -30.80 8.61 25.60 0.22 -30.58 16 8 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.22 11.35 1.40 -10.89 -0.02 11.33 16 10 O -0.58 -32.14 13.48 -148.98 -2.01 -34.14 16 11 C 0.01 0.45 6.70 86.34 0.58 1.03 16 12 N -0.46 -18.86 6.00 -884.65 -5.30 -24.17 16 13 C 0.00 0.04 2.21 44.91 0.10 0.14 16 14 H 0.07 2.43 7.78 -2.39 -0.02 2.41 16 15 C -0.12 -2.61 6.73 31.65 0.21 -2.40 16 16 C 0.11 1.96 7.78 86.83 0.68 2.63 16 17 N -0.71 -17.06 6.24 -459.80 -2.87 -19.93 16 18 C 0.52 18.13 7.68 87.90 0.68 18.81 16 19 O -0.58 -25.18 17.76 -3.04 -0.05 -25.24 16 20 C 0.02 1.00 6.74 86.41 0.58 1.58 16 21 H 0.28 13.62 8.31 -92.70 -0.77 12.85 16 22 H 0.38 21.23 6.60 -74.06 -0.49 20.74 16 23 H 0.07 3.32 8.14 -2.38 -0.02 3.31 16 24 H 0.07 2.87 7.74 -2.39 -0.02 2.85 16 25 H 0.10 2.19 7.57 -2.39 -0.02 2.18 16 26 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.42 8.06 8.96 -92.71 -0.83 7.23 16 30 H 0.07 3.19 7.78 -2.39 -0.02 3.17 16 31 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -65.86 262.05 -4.65 -70.51 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.16 Total: 32.44 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 3.49 Total: 4.76 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -7.93 Total: -91.93 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -2.06 Total: -59.38 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -65.86 -4.65 -70.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.154 kcal (2) G-P(sol) polarization free energy of solvation -65.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds