Wall clock time and date at job start Mon Mar 30 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 120.00021 * 2 1 4 4 O 1.21280 * 120.00140 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00279 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.99858 * 319.64932 * 5 3 2 7 7 C 1.54322 * 109.88168 * 80.73992 * 5 3 2 8 8 C 1.55156 * 102.94356 * 141.61460 * 7 5 3 9 9 C 1.55137 * 101.47987 * 324.33303 * 8 7 5 10 10 N 1.47016 * 109.88759 * 198.55145 * 5 3 2 11 11 C 1.34777 * 125.64640 * 61.59957 * 10 5 3 12 12 O 1.21691 * 120.00328 * 0.02562 * 11 10 5 13 13 C 1.46376 * 120.00069 * 180.02562 * 11 10 5 14 14 H 1.08005 * 119.99800 * 0.02562 * 13 11 10 15 15 C 1.40047 * 120.00289 * 179.72718 * 13 11 10 16 16 N 1.30676 * 119.99832 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99995 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47347 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46833 * 120.00335 * 17 15 13 20 20 H 1.48497 * 109.46998 * 239.99685 * 17 15 13 21 21 H 1.08997 * 109.47106 * 59.99875 * 1 2 3 22 22 H 1.09003 * 109.46881 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47041 * 299.99429 * 1 2 3 24 24 H 0.97000 * 120.00551 * 180.02562 * 2 1 3 25 25 H 1.09001 * 110.72189 * 259.97797 * 7 5 3 26 26 H 1.08998 * 110.71890 * 23.24594 * 7 5 3 27 27 H 1.08991 * 111.00656 * 82.56801 * 8 7 5 28 28 H 1.08998 * 111.00544 * 206.39150 * 8 7 5 29 29 H 1.08995 * 110.49908 * 278.45100 * 9 8 7 30 30 H 1.09006 * 110.33843 * 156.06189 * 9 8 7 31 31 H 0.96995 * 120.00002 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0185 0.3868 0.6641 7 6 4.1713 0.9335 -1.4315 8 6 5.4041 1.8725 -1.5070 9 6 4.9260 3.0788 -0.6567 10 7 4.1458 2.4780 0.4403 11 6 3.9226 3.0400 1.6449 12 8 3.2561 2.4524 2.4764 13 6 4.4819 4.3572 1.9529 14 1 5.0730 4.8789 1.2147 15 6 4.2452 4.9437 3.2024 16 7 3.5255 4.3148 4.0936 17 14 4.9584 6.6249 3.5952 18 1 5.7287 7.1212 2.4266 19 1 3.8554 7.5718 3.8988 20 1 5.8575 6.5185 4.7723 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.9500 -0.8400 -0.0004 25 1 4.4694 -0.1061 -1.5680 26 1 3.4218 1.2208 -2.1689 27 1 6.2816 1.4016 -1.0643 28 1 5.6024 2.1750 -2.5353 29 1 4.2964 3.7399 -1.2522 30 1 5.7815 3.6248 -0.2591 31 1 3.3620 4.7208 4.9591 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044412435.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:10 Heat of formation + Delta-G solvation = -100.923582 kcal Electronic energy + Delta-G solvation = -16163.258233 eV Core-core repulsion = 13443.365125 eV Total energy + Delta-G solvation = -2719.893109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.23695 -39.21659 -37.46840 -35.56244 -34.65588 -32.13386 -30.83216 -28.31522 -27.39129 -24.47988 -22.39673 -22.07412 -20.69442 -18.85238 -18.21966 -17.75417 -16.84581 -16.37044 -16.17484 -15.84416 -15.22967 -14.58755 -14.48047 -14.16020 -13.80175 -13.66467 -13.27758 -13.15060 -12.96772 -12.81476 -12.51288 -12.48017 -11.98054 -11.88637 -11.68641 -10.98041 -10.85697 -10.11265 -9.86838 -9.12138 -8.31411 -6.86182 1.35543 1.37259 1.54946 1.69158 2.19222 2.27517 2.51967 2.88913 3.59378 3.70113 3.75226 4.03839 4.22210 4.33794 4.43750 4.55414 4.68765 4.86232 4.87997 4.96860 5.06015 5.09632 5.30467 5.37745 5.49572 5.62110 6.01134 6.32658 6.64730 6.84788 7.36444 7.46985 8.46253 8.66590 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.030887 B = 0.009347 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.324168 B = 2994.918191 C = 3648.322691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.725 5.725 3 C 0.498 3.502 4 O -0.583 6.583 5 C 0.114 3.886 6 H 0.081 0.919 7 C -0.103 4.103 8 C -0.114 4.114 9 C 0.104 3.896 10 N -0.636 5.636 11 C 0.559 3.441 12 O -0.626 6.626 13 C -0.567 4.567 14 H 0.085 0.915 15 C 0.024 3.976 16 N -0.824 5.824 17 Si 1.000 3.000 18 H -0.245 1.245 19 H -0.271 1.271 20 H -0.262 1.262 21 H 0.052 0.948 22 H 0.121 0.879 23 H 0.024 0.976 24 H 0.418 0.582 25 H 0.127 0.873 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 -8.465 -12.400 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.379 5.379 3 C 0.284 3.716 4 O -0.461 6.461 5 C 0.006 3.994 6 H 0.099 0.901 7 C -0.141 4.141 8 C -0.152 4.152 9 C -0.019 4.019 10 N -0.373 5.373 11 C 0.366 3.634 12 O -0.513 6.513 13 C -0.603 4.603 14 H 0.103 0.897 15 C -0.190 4.190 16 N -0.454 5.454 17 Si 0.819 3.181 18 H -0.168 1.168 19 H -0.197 1.197 20 H -0.187 1.187 21 H 0.071 0.929 22 H 0.140 0.860 23 H 0.043 0.957 24 H 0.254 0.746 25 H 0.145 0.855 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.132 0.868 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.362 -8.014 -11.708 14.383 hybrid contribution -0.163 0.465 0.760 0.906 sum 2.199 -7.550 -10.948 13.479 Atomic orbital electron populations 1.21584 0.79329 1.04166 1.00430 1.45686 1.08126 1.08326 1.75785 1.21766 0.91870 0.83723 0.74208 1.90646 1.71231 1.33875 1.50379 1.21566 0.88958 0.89157 0.99740 0.90118 1.22615 0.97937 1.03208 0.90339 1.22830 0.97333 0.93833 1.01174 1.22284 0.94537 0.97092 0.88036 1.48411 1.55545 1.18766 1.14549 1.18341 0.79531 0.86715 0.78854 1.90529 1.45451 1.66252 1.49037 1.21425 1.35436 1.01976 1.01461 0.89653 1.27067 0.93344 1.03617 0.95000 1.70219 1.30644 1.39032 1.05460 0.84947 0.78468 0.75218 0.79476 1.16783 1.19653 1.18653 0.92895 0.86025 0.95749 0.74588 0.85516 0.90693 0.89256 0.86787 0.94120 0.91280 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.44 10.70 127.77 1.37 3.81 16 2 N -0.73 -22.50 5.71 -484.53 -2.77 -25.27 16 3 C 0.50 21.52 6.27 87.66 0.55 22.07 16 4 O -0.58 -32.50 16.13 -3.03 -0.05 -32.55 16 5 C 0.11 4.45 3.26 44.60 0.15 4.60 16 6 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 7 C -0.10 -2.52 6.46 31.78 0.21 -2.31 16 8 C -0.11 -2.72 7.10 32.07 0.23 -2.49 16 9 C 0.10 3.90 6.53 86.94 0.57 4.47 16 10 N -0.64 -31.34 2.75 -796.79 -2.19 -33.53 16 11 C 0.56 35.31 7.18 86.36 0.62 35.93 16 12 O -0.63 -44.99 14.83 -4.32 -0.06 -45.06 16 13 C -0.57 -34.67 8.98 24.83 0.22 -34.45 16 14 H 0.09 4.73 6.64 -2.91 -0.02 4.71 16 15 C 0.02 1.43 5.50 85.30 0.47 1.90 16 16 N -0.82 -53.62 11.83 21.84 0.26 -53.37 16 17 Si 1.00 43.56 29.56 68.60 2.03 45.59 16 18 H -0.24 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.42 9.06 8.83 -92.71 -0.82 8.24 16 25 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 1.83 7.84 -2.39 -0.02 1.81 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 2.61 7.13 -2.38 -0.02 2.60 16 31 H 0.27 16.03 8.29 -92.71 -0.77 15.26 16 Total: -1.00 -95.30 267.99 1.91 -93.39 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.32 Total: 17.28 kcal Atomic # 6 Polarization: 29.14 SS G_CDS: 4.38 Total: 33.51 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.70 Total: -112.16 kcal Atomic # 8 Polarization: -77.49 SS G_CDS: -0.11 Total: -77.60 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -95.30 1.91 -93.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044412435.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.530 kcal (2) G-P(sol) polarization free energy of solvation -95.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds