Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 115.56247 * 2 1 4 4 C 1.52994 * 117.50073 * 214.30467 * 2 1 3 5 5 C 1.53000 * 117.49621 * 145.68070 * 2 1 3 6 6 H 1.08996 * 117.52009 * 0.02562 * 5 2 1 7 7 N 1.46499 * 117.49776 * 214.98249 * 5 2 1 8 8 C 1.34777 * 120.00065 * 154.99315 * 7 5 2 9 9 O 1.21443 * 120.00019 * 359.97438 * 8 7 5 10 10 C 1.48835 * 120.00304 * 179.97438 * 8 7 5 11 11 O 1.21503 * 119.99719 * 0.02562 * 10 8 7 12 12 N 1.34769 * 120.00097 * 179.97438 * 10 8 7 13 13 C 1.36126 * 119.99952 * 179.97438 * 12 10 8 14 14 H 1.08002 * 119.99685 * 0.02562 * 13 12 10 15 15 C 1.39582 * 119.99932 * 180.02562 * 13 12 10 16 16 N 1.31014 * 120.00244 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00042 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47228 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00061 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00154 * 17 15 13 21 21 H 1.08995 * 109.47800 * 274.31513 * 1 2 3 22 22 H 1.09001 * 109.47549 * 34.31619 * 1 2 3 23 23 H 1.09003 * 109.46949 * 154.31446 * 1 2 3 24 24 H 1.08994 * 109.47013 * 205.68797 * 3 2 1 25 25 H 1.09003 * 109.46573 * 325.68574 * 3 2 1 26 26 H 1.08999 * 109.47331 * 85.67987 * 3 2 1 27 27 H 1.09003 * 117.49569 * 145.02577 * 4 2 1 28 28 H 1.08996 * 117.50319 * 0.02562 * 4 2 1 29 29 H 0.97000 * 120.00380 * 334.98510 * 7 5 2 30 30 H 0.97000 * 120.00347 * 0.02562 * 12 10 8 31 31 H 0.97005 * 119.99794 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1210 -0.7648 5 6 2.2363 -1.1209 0.7652 6 1 1.6114 -1.8587 1.2683 7 7 3.4931 -0.7904 1.4416 8 6 3.8985 -1.5162 2.5025 9 8 3.2218 -2.4438 2.8979 10 6 5.1755 -1.1808 3.1894 11 8 5.8523 -0.2524 2.7941 12 7 5.5806 -1.9062 4.2505 13 6 6.7489 -1.5998 4.8785 14 1 7.3509 -0.7751 4.5265 15 6 7.1687 -2.3515 5.9771 16 7 6.4386 -3.3523 6.4037 17 14 8.7715 -1.9306 6.8393 18 1 8.9892 -2.8721 7.9667 19 1 9.8961 -2.0439 5.8762 20 1 8.7036 -0.5415 7.3599 21 1 -0.3634 0.0773 1.0247 22 1 -0.3634 0.8488 -0.5793 23 1 -0.3633 -0.9262 -0.4454 24 1 3.1823 1.3084 -0.4454 25 1 1.5811 2.0742 -0.5794 26 1 2.2771 1.7415 1.0247 27 1 3.1716 -0.8752 -1.2681 28 1 1.6113 -1.8583 -1.2684 29 1 4.0335 -0.0493 1.1260 30 1 5.0401 -2.6472 4.5664 31 1 5.6061 -3.5706 5.9562 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045136803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = -80.930502 kcal Electronic energy + Delta-G solvation = -15297.024530 eV Core-core repulsion = 12577.998387 eV Total energy + Delta-G solvation = -2719.026144 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.55353 -39.89731 -38.75710 -36.77742 -34.44571 -33.27810 -30.00288 -28.45858 -27.69317 -25.34532 -22.83738 -21.54643 -20.45731 -20.21056 -19.16588 -17.87960 -16.76114 -16.74725 -16.63461 -15.53205 -15.31806 -15.18168 -14.86134 -14.63107 -13.96295 -13.58629 -13.52487 -13.15564 -12.89495 -12.71594 -12.47143 -12.18584 -12.11397 -12.04925 -11.88699 -11.68681 -10.84572 -10.38579 -10.36110 -9.80936 -9.17549 -6.25651 0.43316 1.51747 1.61877 1.63663 1.86026 2.23752 2.39978 2.76546 3.02716 3.07633 3.56921 3.74162 3.83298 3.85534 4.11162 4.55955 4.73484 4.81172 4.84278 4.99610 5.00591 5.02705 5.23947 5.28730 5.35945 5.40192 5.68629 5.99976 6.27492 6.41970 6.84963 7.13235 7.56100 8.26231 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.062110 B = 0.005406 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.707014 B = 5178.278391 C = 5436.002915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.167 4.167 5 C 0.047 3.953 6 H 0.124 0.876 7 N -0.663 5.663 8 C 0.521 3.479 9 O -0.566 6.566 10 C 0.394 3.606 11 O -0.610 6.610 12 N -0.523 5.523 13 C -0.416 4.416 14 H 0.095 0.905 15 C -0.031 4.031 16 N -0.884 5.884 17 Si 1.143 2.857 18 H -0.270 1.270 19 H -0.265 1.265 20 H -0.264 1.264 21 H 0.056 0.944 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.415 0.585 30 H 0.389 0.611 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 5.828 -11.578 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.121 4.121 3 C -0.181 4.181 4 C -0.205 4.205 5 C -0.058 4.058 6 H 0.142 0.858 7 N -0.313 5.313 8 C 0.305 3.695 9 O -0.446 6.446 10 C 0.180 3.820 11 O -0.499 6.499 12 N -0.159 5.159 13 C -0.546 4.546 14 H 0.113 0.887 15 C -0.233 4.233 16 N -0.519 5.519 17 Si 0.960 3.040 18 H -0.195 1.195 19 H -0.189 1.189 20 H -0.189 1.189 21 H 0.075 0.925 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.120 0.880 28 H 0.140 0.860 29 H 0.253 0.747 30 H 0.224 0.776 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.792 5.320 -10.312 13.977 hybrid contribution -1.130 0.144 -1.155 1.623 sum -8.923 5.465 -11.467 15.523 Atomic orbital electron populations 1.21401 0.89804 1.03510 1.02347 1.22200 0.96464 0.91604 1.01844 1.21408 1.00628 0.93940 1.02083 1.23860 1.03072 1.01324 0.92217 1.22044 0.87450 1.03521 0.92775 0.85840 1.44964 1.23240 1.33652 1.29454 1.20017 0.85859 0.82320 0.81328 1.90662 1.57019 1.30711 1.66192 1.19510 0.89052 0.87723 0.85765 1.90553 1.58392 1.32926 1.68052 1.41676 1.20644 1.28147 1.25433 1.20862 0.99836 1.19131 1.14757 0.88677 1.28466 1.07889 0.92129 0.94801 1.70798 1.13704 1.26768 1.40676 0.82569 0.68919 0.76983 0.75564 1.19489 1.18936 1.18926 0.92542 0.90018 0.91198 0.92224 0.89486 0.93033 0.87979 0.85981 0.74710 0.77633 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.85 71.98 0.71 -1.06 16 2 C -0.12 -2.39 2.70 -52.18 -0.14 -2.53 16 3 C -0.12 -2.32 8.85 71.98 0.64 -1.69 16 4 C -0.17 -3.33 9.75 30.59 0.30 -3.03 16 5 C 0.05 1.30 6.13 44.99 0.28 1.57 16 6 H 0.12 3.73 7.40 -2.39 -0.02 3.71 16 7 N -0.66 -23.02 5.33 -444.45 -2.37 -25.39 16 8 C 0.52 23.14 7.87 87.08 0.69 23.82 16 9 O -0.57 -26.84 16.03 -3.54 -0.06 -26.90 16 10 C 0.39 20.44 7.82 87.08 0.68 21.12 16 11 O -0.61 -33.54 16.03 -3.72 -0.06 -33.60 16 12 N -0.52 -28.72 5.24 -308.87 -1.62 -30.34 16 13 C -0.42 -23.67 9.67 84.35 0.82 -22.85 16 14 H 0.10 5.57 7.15 -2.91 -0.02 5.55 16 15 C -0.03 -1.63 5.51 85.14 0.47 -1.16 16 16 N -0.88 -49.42 13.66 21.76 0.30 -49.12 16 17 Si 1.14 45.94 29.93 68.60 2.05 47.99 16 18 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.08 0.98 7.92 -2.39 -0.02 0.96 16 23 H 0.07 0.95 7.90 -2.39 -0.02 0.93 16 24 H 0.06 1.12 7.61 -2.39 -0.02 1.10 16 25 H 0.09 1.24 7.92 -2.39 -0.02 1.22 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 2.00 8.05 -2.39 -0.02 1.98 16 28 H 0.12 1.96 8.05 -2.39 -0.02 1.94 16 29 H 0.42 13.67 7.15 -92.71 -0.66 13.01 16 30 H 0.39 20.96 6.18 -92.71 -0.57 20.39 16 31 H 0.26 14.73 6.78 -92.70 -0.63 14.10 16 Total: -1.00 -67.31 274.09 2.74 -64.57 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: 0.07 Total: 38.58 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 4.43 Total: 14.21 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.69 Total: -104.85 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -0.12 Total: -60.50 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.05 Total: 47.99 kcal Total: -67.31 2.74 -64.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045136803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.358 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds