Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46932 * 2 1 4 4 N 1.46495 * 109.47287 * 180.02562 * 3 2 1 5 5 C 1.45660 * 118.57413 * 269.98020 * 4 3 2 6 6 C 1.49911 * 111.23373 * 160.35799 * 5 4 3 7 7 O 1.21290 * 118.64151 * 199.91407 * 6 5 4 8 8 N 1.33658 * 122.70952 * 20.14602 * 6 5 4 9 9 C 1.37097 * 118.57449 * 179.84855 * 8 6 5 10 10 H 1.07996 * 120.00039 * 325.56416 * 9 8 6 11 11 C 1.38951 * 119.99817 * 145.56630 * 9 8 6 12 12 N 1.31411 * 119.99938 * 329.73031 * 11 9 8 13 13 Si 1.86796 * 119.99834 * 149.73014 * 11 9 8 14 14 H 1.48497 * 109.47289 * 60.00124 * 13 11 9 15 15 H 1.48499 * 109.47315 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47318 * 300.00049 * 13 11 9 17 17 C 1.45652 * 122.84842 * 359.56589 * 8 6 5 18 18 C 1.33659 * 118.58050 * 89.99770 * 4 3 2 19 19 O 1.21276 * 118.64473 * 0.03113 * 18 4 3 20 20 H 1.08997 * 109.46977 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47032 * 299.99977 * 1 2 3 22 22 H 1.08994 * 109.47333 * 60.00096 * 1 2 3 23 23 H 1.09001 * 109.47032 * 240.00023 * 2 1 3 24 24 H 1.08994 * 109.47333 * 119.99903 * 2 1 3 25 25 H 1.09001 * 109.47244 * 60.00153 * 3 2 1 26 26 H 1.09007 * 109.47189 * 299.99948 * 3 2 1 27 27 H 1.09006 * 109.11232 * 281.02191 * 5 4 3 28 28 H 1.09004 * 109.11485 * 40.14361 * 5 4 3 29 29 H 0.96999 * 120.00266 * 354.30788 * 12 11 9 30 30 H 1.09005 * 109.11552 * 101.26195 * 17 8 6 31 31 H 1.09000 * 109.11560 * 220.38601 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2021 1.4429 1.2783 6 6 5.6175 0.9732 1.1251 7 8 6.2063 0.5717 2.1066 8 7 6.2589 0.9830 -0.0475 9 6 7.5545 0.5368 -0.0900 10 1 8.2125 0.7083 0.7490 11 6 8.0211 -0.1360 -1.2127 12 7 7.1955 -0.8584 -1.9361 13 14 9.8219 -0.0135 -1.6935 14 1 10.6660 -0.5327 -0.5876 15 1 10.0629 -0.8173 -2.9187 16 1 10.1687 1.4063 -1.9563 17 6 5.6390 1.4415 -1.2832 18 6 4.1438 1.4427 -1.1746 19 8 3.4869 1.4434 -2.1940 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 4.2000 2.4539 1.6857 28 1 3.6818 0.7790 1.9687 29 1 6.2805 -0.9896 -1.6419 30 1 5.9819 2.4532 -1.5006 31 1 5.9363 0.7813 -2.0980 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086933782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = -61.489073 kcal Electronic energy + Delta-G solvation = -16218.414303 eV Core-core repulsion = 13500.231203 eV Total energy + Delta-G solvation = -2718.183100 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43830 -38.22343 -35.99385 -35.07844 -33.32068 -31.58064 -28.13257 -27.91880 -25.38684 -24.10417 -21.92890 -20.64188 -18.48741 -17.69445 -16.78154 -16.23779 -16.08918 -14.82609 -14.54547 -14.12855 -13.79054 -13.65746 -13.54634 -13.22212 -12.95424 -12.59663 -11.95908 -11.85716 -11.55237 -11.35095 -11.19688 -10.95636 -10.62336 -10.28270 -10.21288 -9.59801 -9.04130 -8.81565 -8.43245 -7.89861 -6.75094 -4.15539 2.84298 3.09424 3.27952 3.32490 3.52645 3.66456 4.08328 4.50054 4.70482 4.91272 5.02064 5.07230 5.20410 5.31655 5.47097 5.60018 5.66690 5.76532 5.80021 6.00616 6.07425 6.15120 6.28272 6.34293 6.62020 7.49466 7.77213 7.97598 8.34789 8.43543 8.71136 9.20283 9.57700 10.45048 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.038563 B = 0.008534 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.915020 B = 3280.137478 C = 3624.663075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.110 3.890 4 N -0.606 5.606 5 C 0.107 3.893 6 C 0.441 3.559 7 O -0.570 6.570 8 N -0.439 5.439 9 C -0.411 4.411 10 H 0.094 0.906 11 C 0.010 3.990 12 N -0.861 5.861 13 Si 1.075 2.925 14 H -0.281 1.281 15 H -0.278 1.278 16 H -0.282 1.282 17 C 0.078 3.922 18 C 0.516 3.484 19 O -0.547 6.547 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.275 0.725 30 H 0.088 0.912 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.773 4.599 2.100 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.012 4.012 4 N -0.341 5.341 5 C -0.019 4.019 6 C 0.229 3.771 7 O -0.453 6.453 8 N -0.161 5.161 9 C -0.538 4.538 10 H 0.112 0.888 11 C -0.198 4.198 12 N -0.494 5.494 13 Si 0.900 3.100 14 H -0.207 1.207 15 H -0.204 1.204 16 H -0.208 1.208 17 C -0.048 4.048 18 C 0.305 3.695 19 O -0.425 6.425 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.719 3.960 0.877 8.720 hybrid contribution -1.245 0.444 1.287 1.844 sum -8.963 4.404 2.164 10.219 Atomic orbital electron populations 1.21669 0.95201 1.01792 1.01687 1.21878 0.95978 0.97286 1.02915 1.21556 0.79314 0.97274 1.03087 1.47471 1.07034 1.73427 1.06151 1.21463 0.92075 1.02720 0.85669 1.19695 0.87236 0.84573 0.85616 1.90598 1.66722 1.51014 1.36968 1.43124 1.13061 1.54988 1.04879 1.20319 0.85729 1.40044 1.07693 0.88787 1.26556 1.07548 0.91553 0.94122 1.70799 1.07953 1.28696 1.41965 0.83416 0.72878 0.76930 0.76737 1.20719 1.20351 1.20786 1.21594 0.86900 1.03213 0.93123 1.20496 0.91045 0.75106 0.82882 1.90670 1.67001 1.50511 1.34306 0.92576 0.92776 0.92543 0.91323 0.91838 0.90646 0.89540 0.89917 0.88312 0.91330 0.89448 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.16 16 2 C -0.14 -1.93 6.25 -26.73 -0.17 -2.09 16 3 C 0.11 1.54 5.26 -4.05 -0.02 1.52 16 4 N -0.61 -10.65 2.81 -176.85 -0.50 -11.15 16 5 C 0.11 1.88 6.46 -6.03 -0.04 1.84 16 6 C 0.44 10.48 7.54 -11.86 -0.09 10.39 16 7 O -0.57 -15.58 16.58 5.55 0.09 -15.49 16 8 N -0.44 -10.98 2.71 -117.78 -0.32 -11.30 16 9 C -0.41 -11.27 8.66 -14.93 -0.13 -11.40 16 10 H 0.09 2.71 7.64 -52.49 -0.40 2.31 16 11 C 0.01 0.27 4.78 -17.47 -0.08 0.19 16 12 N -0.86 -23.88 12.14 55.50 0.67 -23.20 16 13 Si 1.08 23.13 30.01 -169.99 -5.10 18.03 16 14 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 17 C 0.08 1.75 5.82 -6.03 -0.04 1.72 16 18 C 0.52 10.66 7.58 -11.86 -0.09 10.57 16 19 O -0.55 -12.16 16.32 5.56 0.09 -12.07 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.83 8.03 -51.93 -0.42 0.42 16 26 H 0.09 1.27 7.24 -51.92 -0.38 0.89 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.10 1.56 8.11 -51.93 -0.42 1.14 16 29 H 0.28 7.84 7.30 -40.82 -0.30 7.54 16 30 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.13 3.22 5.15 -51.93 -0.27 2.96 16 LS Contribution 264.63 15.07 3.99 3.99 Total: -1.00 -31.83 264.63 -5.30 -37.12 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.93 Total: 2.50 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -0.29 Total: 11.58 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.14 Total: -45.66 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: 0.18 Total: -27.57 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.10 Total: 18.03 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.83 -5.30 -37.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086933782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.367 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds