Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46932 * 2 1 4 4 N 1.46495 * 109.47287 * 180.02562 * 3 2 1 5 5 C 1.45660 * 118.57413 * 269.98020 * 4 3 2 6 6 C 1.49911 * 111.23373 * 160.35799 * 5 4 3 7 7 O 1.21290 * 118.64151 * 199.91407 * 6 5 4 8 8 N 1.33658 * 122.70952 * 20.14602 * 6 5 4 9 9 C 1.37097 * 118.57449 * 179.84855 * 8 6 5 10 10 H 1.07996 * 120.00039 * 325.56416 * 9 8 6 11 11 C 1.38951 * 119.99817 * 145.56630 * 9 8 6 12 12 N 1.31411 * 119.99938 * 329.73031 * 11 9 8 13 13 Si 1.86796 * 119.99834 * 149.73014 * 11 9 8 14 14 H 1.48497 * 109.47289 * 60.00124 * 13 11 9 15 15 H 1.48499 * 109.47315 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47318 * 300.00049 * 13 11 9 17 17 C 1.45652 * 122.84842 * 359.56589 * 8 6 5 18 18 C 1.33659 * 118.58050 * 89.99770 * 4 3 2 19 19 O 1.21276 * 118.64473 * 0.03113 * 18 4 3 20 20 H 1.08997 * 109.46977 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47032 * 299.99977 * 1 2 3 22 22 H 1.08994 * 109.47333 * 60.00096 * 1 2 3 23 23 H 1.09001 * 109.47032 * 240.00023 * 2 1 3 24 24 H 1.08994 * 109.47333 * 119.99903 * 2 1 3 25 25 H 1.09001 * 109.47244 * 60.00153 * 3 2 1 26 26 H 1.09007 * 109.47189 * 299.99948 * 3 2 1 27 27 H 1.09006 * 109.11232 * 281.02191 * 5 4 3 28 28 H 1.09004 * 109.11485 * 40.14361 * 5 4 3 29 29 H 0.96999 * 120.00266 * 354.30788 * 12 11 9 30 30 H 1.09005 * 109.11552 * 101.26195 * 17 8 6 31 31 H 1.09000 * 109.11560 * 220.38601 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2021 1.4429 1.2783 6 6 5.6175 0.9732 1.1251 7 8 6.2063 0.5717 2.1066 8 7 6.2589 0.9830 -0.0475 9 6 7.5545 0.5368 -0.0900 10 1 8.2125 0.7083 0.7490 11 6 8.0211 -0.1360 -1.2127 12 7 7.1955 -0.8584 -1.9361 13 14 9.8219 -0.0135 -1.6935 14 1 10.6660 -0.5327 -0.5876 15 1 10.0629 -0.8173 -2.9187 16 1 10.1687 1.4063 -1.9563 17 6 5.6390 1.4415 -1.2832 18 6 4.1438 1.4427 -1.1746 19 8 3.4869 1.4434 -2.1940 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 4.2000 2.4539 1.6857 28 1 3.6818 0.7790 1.9687 29 1 6.2805 -0.9896 -1.6419 30 1 5.9819 2.4532 -1.5006 31 1 5.9363 0.7813 -2.0980 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086933782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = -83.359237 kcal Electronic energy + Delta-G solvation = -16219.362665 eV Core-core repulsion = 13500.231203 eV Total energy + Delta-G solvation = -2719.131461 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.10793 -40.03922 -37.53442 -36.95920 -34.66858 -33.42214 -29.76469 -29.52974 -26.73277 -26.01178 -23.27713 -22.10363 -20.39118 -19.38871 -18.51663 -17.86261 -17.72841 -16.46701 -15.95241 -15.75874 -15.50402 -15.31156 -15.11234 -14.86057 -14.46273 -14.07577 -13.42017 -13.17636 -12.93385 -12.89529 -12.75394 -12.28437 -12.12942 -11.91938 -11.67377 -11.38627 -10.92847 -10.66698 -10.00563 -9.84975 -8.87069 -6.29364 1.18874 1.43569 1.55813 1.67200 1.84361 1.92032 2.31099 2.66734 2.89189 3.13766 3.60353 3.94744 3.98384 4.15504 4.27109 4.33954 4.40465 4.42057 4.57770 4.68267 4.86639 5.12296 5.14514 5.20805 5.43082 5.62771 5.78804 6.00437 6.40741 6.69271 6.78269 7.20304 7.62009 8.31307 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.038563 B = 0.008534 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.915020 B = 3280.137478 C = 3624.663075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 C 0.107 3.893 4 N -0.598 5.598 5 C 0.118 3.882 6 C 0.432 3.568 7 O -0.613 6.613 8 N -0.454 5.454 9 C -0.436 4.436 10 H 0.071 0.929 11 C -0.023 4.023 12 N -0.876 5.876 13 Si 1.124 2.876 14 H -0.273 1.273 15 H -0.277 1.277 16 H -0.261 1.261 17 C 0.081 3.919 18 C 0.517 3.483 19 O -0.568 6.568 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.260 0.740 30 H 0.103 0.897 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 5.666 2.864 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.179 4.179 3 C -0.013 4.013 4 N -0.331 5.331 5 C -0.007 4.007 6 C 0.222 3.778 7 O -0.499 6.499 8 N -0.175 5.175 9 C -0.563 4.563 10 H 0.089 0.911 11 C -0.226 4.226 12 N -0.510 5.510 13 Si 0.943 3.057 14 H -0.198 1.198 15 H -0.202 1.202 16 H -0.186 1.186 17 C -0.046 4.046 18 C 0.305 3.695 19 O -0.448 6.448 20 H 0.079 0.921 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.100 0.900 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.970 5.042 1.661 10.423 hybrid contribution -0.922 0.098 1.121 1.455 sum -9.892 5.140 2.783 11.490 Atomic orbital electron populations 1.21629 0.92535 1.02568 1.02939 1.21862 0.98285 0.96609 1.01180 1.21884 0.76518 0.97910 1.05032 1.47483 1.08670 1.71900 1.05053 1.21459 0.87934 1.05366 0.85917 1.20746 0.89458 0.83194 0.84394 1.90569 1.68500 1.52636 1.38164 1.43312 1.12825 1.55207 1.06136 1.20303 0.87085 1.41248 1.07654 0.91104 1.27971 1.10822 0.90248 0.93563 1.70926 1.07447 1.30137 1.42456 0.82829 0.68231 0.78091 0.76584 1.19785 1.20201 1.18564 1.21530 0.88608 1.03207 0.91208 1.20104 0.90093 0.75587 0.83761 1.90659 1.66998 1.51927 1.35194 0.92143 0.90366 0.92412 0.94916 0.91762 0.86219 0.90011 0.85848 0.85561 0.93021 0.87926 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 71.98 0.71 -1.77 16 2 C -0.14 -3.52 6.25 30.59 0.19 -3.33 16 3 C 0.11 2.65 5.26 86.38 0.45 3.11 16 4 N -0.60 -19.61 2.81 -832.44 -2.34 -21.95 16 5 C 0.12 3.80 6.46 85.54 0.55 4.35 16 6 C 0.43 20.34 7.54 87.58 0.66 21.00 16 7 O -0.61 -33.69 16.58 -3.06 -0.05 -33.75 16 8 N -0.45 -22.98 2.71 -645.54 -1.75 -24.73 16 9 C -0.44 -24.47 8.66 84.04 0.73 -23.74 16 10 H 0.07 4.23 7.64 -2.91 -0.02 4.21 16 11 C -0.02 -1.22 4.78 84.93 0.41 -0.81 16 12 N -0.88 -49.78 12.14 21.66 0.26 -49.52 16 13 Si 1.12 46.72 30.01 68.60 2.06 48.78 16 14 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 15 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 17 C 0.08 3.66 5.82 85.55 0.50 4.16 16 18 C 0.52 21.05 7.58 87.58 0.66 21.71 16 19 O -0.57 -25.16 16.32 -3.02 -0.05 -25.21 16 20 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.12 1.98 8.03 -2.39 -0.02 1.96 16 26 H 0.08 2.17 7.24 -2.38 -0.02 2.16 16 27 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 28 H 0.13 3.48 8.11 -2.39 -0.02 3.46 16 29 H 0.26 15.33 7.30 -92.71 -0.68 14.65 16 30 H 0.10 4.22 8.14 -2.38 -0.02 4.20 16 31 H 0.10 5.32 5.15 -2.39 -0.01 5.31 16 Total: -1.00 -71.29 264.63 4.22 -67.07 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.22 Total: 14.63 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 4.87 Total: 24.68 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -3.83 Total: -96.20 kcal Atomic # 8 Polarization: -58.86 SS G_CDS: -0.10 Total: -58.96 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.06 Total: 48.78 kcal Total: -71.29 4.22 -67.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086933782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.286 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds