Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46575 * 2 1 4 4 C 1.50701 * 109.46959 * 119.99895 * 2 1 3 5 5 H 1.08000 * 119.99844 * 114.48912 * 4 2 1 6 6 C 1.37878 * 120.00013 * 294.48441 * 4 2 1 7 7 N 1.31513 * 119.99904 * 164.79338 * 6 4 2 8 8 Si 1.86800 * 120.00170 * 344.80069 * 6 4 2 9 9 H 1.48508 * 109.46507 * 269.99767 * 8 6 4 10 10 H 1.48498 * 109.47254 * 29.99240 * 8 6 4 11 11 H 1.48491 * 109.47364 * 149.99733 * 8 6 4 12 12 N 1.46897 * 109.47036 * 240.00174 * 2 1 3 13 13 C 1.46899 * 111.00162 * 85.00033 * 12 2 1 14 14 H 1.08998 * 110.54121 * 327.84359 * 13 12 2 15 15 C 1.54230 * 110.60429 * 204.99664 * 13 12 2 16 16 C 1.51310 * 103.55487 * 241.47980 * 15 13 12 17 17 O 1.21231 * 125.39867 * 179.97438 * 16 15 13 18 18 N 1.33877 * 109.21050 * 0.02562 * 16 15 13 19 19 C 1.46496 * 122.76422 * 179.97438 * 18 16 15 20 20 C 1.33878 * 114.47260 * 0.02562 * 18 16 15 21 21 O 1.21227 * 125.39495 * 180.02562 * 20 18 16 22 22 H 1.09001 * 109.47164 * 173.54847 * 1 2 3 23 23 H 1.08994 * 109.47265 * 293.54819 * 1 2 3 24 24 H 1.09002 * 109.47128 * 53.55570 * 1 2 3 25 25 H 0.97003 * 119.99945 * 354.90540 * 7 6 4 26 26 H 1.00901 * 111.00455 * 321.04394 * 12 2 1 27 27 H 1.08996 * 110.60996 * 0.02562 * 15 13 12 28 28 H 1.09007 * 110.60686 * 122.81095 * 15 13 12 29 29 H 1.08998 * 109.47334 * 0.02724 * 19 18 16 30 30 H 1.08998 * 109.47329 * 120.03195 * 19 18 16 31 31 H 1.09001 * 109.47279 * 240.02855 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5778 -1.6375 1.1339 6 6 1.7955 -0.1767 2.4796 7 7 1.9582 -0.9186 3.5532 8 14 1.2434 1.5999 2.6469 9 1 2.4342 2.4787 2.7704 10 1 0.4623 1.9908 1.4459 11 1 0.3951 1.7428 3.8572 12 7 2.0196 -0.6924 -1.1994 13 6 2.0824 0.2226 -2.3469 14 1 1.2942 0.9726 -2.2815 15 6 1.9784 -0.5601 -3.6717 16 6 3.2906 -0.2622 -4.3637 17 8 3.6245 -0.6871 -5.4488 18 7 4.0249 0.5441 -3.5872 19 6 5.3559 1.0195 -3.9727 20 6 3.4432 0.8794 -2.4289 21 8 3.9289 1.5969 -1.5811 22 1 -0.3633 -1.0212 -0.1155 23 1 -0.3633 0.4105 0.9420 24 1 -0.3633 0.6105 -0.8267 25 1 2.1727 -1.8604 3.4640 26 1 1.4496 -1.4979 -1.4101 27 1 1.8796 -1.6284 -3.4794 28 1 1.1383 -0.1995 -4.2654 29 1 5.6164 0.6165 -4.9513 30 1 5.3540 2.1086 -4.0171 31 1 6.0877 0.6873 -3.2364 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114650615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = -55.888524 kcal Electronic energy + Delta-G solvation = -15960.910239 eV Core-core repulsion = 13242.969997 eV Total energy + Delta-G solvation = -2717.940242 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.70644 -38.45524 -36.50999 -35.56780 -33.29027 -31.55592 -28.54079 -26.80104 -25.16722 -24.56345 -21.94950 -20.38248 -19.20244 -17.60473 -17.08469 -16.89976 -16.23213 -14.97145 -14.76543 -14.33811 -14.05625 -13.86065 -13.54064 -13.09891 -12.69526 -12.59403 -12.41379 -12.21713 -11.82404 -11.42282 -11.17320 -10.55702 -10.43721 -10.14625 -9.91195 -9.68721 -9.61797 -8.91888 -8.27844 -7.79863 -6.41410 -4.02152 1.64186 2.60136 2.86943 3.41107 3.48226 3.59402 4.08836 4.33067 4.47756 4.52517 4.83565 5.14743 5.22540 5.29006 5.30146 5.47481 5.51959 5.57755 5.65103 6.16908 6.28150 6.49238 6.70910 6.87971 7.07297 7.39675 7.56672 7.94839 8.03295 8.16663 8.45784 8.99408 9.64681 10.97771 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.040665 B = 0.007855 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.388512 B = 3563.798642 C = 3797.184569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.184 3.816 3 H 0.040 0.960 4 C -0.581 4.581 5 H 0.063 0.937 6 C 0.031 3.969 7 N -0.909 5.909 8 Si 1.041 2.959 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.652 5.652 13 C 0.049 3.951 14 H 0.093 0.907 15 C -0.160 4.160 16 C 0.536 3.464 17 O -0.498 6.498 18 N -0.577 5.577 19 C 0.068 3.932 20 C 0.537 3.463 21 O -0.460 6.460 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.021 0.979 25 H 0.268 0.732 26 H 0.343 0.657 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 3.282 -15.030 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.075 3.925 3 H 0.057 0.943 4 C -0.619 4.619 5 H 0.081 0.919 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.870 3.130 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.286 5.286 13 C -0.065 4.065 14 H 0.111 0.889 15 C -0.200 4.200 16 C 0.326 3.674 17 O -0.371 6.371 18 N -0.321 5.321 19 C -0.074 4.074 20 C 0.324 3.676 21 O -0.328 6.328 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.163 0.837 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.015 4.728 -13.834 14.619 hybrid contribution -0.426 -1.103 -1.279 1.742 sum -0.441 3.625 -15.113 15.548 Atomic orbital electron populations 1.22874 1.00760 0.99854 1.00121 1.19753 0.89134 0.95357 0.88213 0.94266 1.21884 1.39173 1.10902 0.89974 0.91877 1.25660 0.94626 1.05171 0.91940 1.70800 1.44642 1.08269 1.30641 0.84143 0.77217 0.76018 0.75650 1.21133 1.20008 1.21308 1.60674 1.58840 1.07777 1.01355 1.22248 0.94564 0.97249 0.92398 0.88910 1.22758 0.96437 1.04694 0.96156 1.20703 0.86725 0.76067 0.83921 1.90735 1.75518 1.51454 1.19430 1.46680 1.19081 1.45755 1.20591 1.21884 0.82344 1.00706 1.02439 1.21019 0.87802 0.79405 0.79402 1.90759 1.68466 1.33946 1.39605 0.93467 0.92258 0.96033 0.92193 0.83665 0.85703 0.86326 0.89201 0.90766 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 8.45 37.16 0.31 -3.22 16 2 C 0.18 4.17 1.99 -68.87 -0.14 4.03 16 3 H 0.04 0.96 6.15 -51.93 -0.32 0.64 16 4 C -0.58 -16.13 9.13 -34.44 -0.31 -16.45 16 5 H 0.06 1.92 8.06 -52.49 -0.42 1.49 16 6 C 0.03 0.88 5.33 -17.82 -0.09 0.79 16 7 N -0.91 -27.94 13.70 55.43 0.76 -27.18 16 8 Si 1.04 25.31 26.17 -169.99 -4.45 20.87 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 10 H -0.27 -6.01 5.54 56.52 0.31 -5.69 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 N -0.65 -12.23 6.07 -101.17 -0.61 -12.85 16 13 C 0.05 0.74 3.18 -67.92 -0.22 0.53 16 14 H 0.09 1.30 7.27 -51.93 -0.38 0.92 16 15 C -0.16 -1.78 6.70 -26.94 -0.18 -1.96 16 16 C 0.54 7.23 8.08 -11.09 -0.09 7.14 16 17 O -0.50 -7.69 17.23 5.60 0.10 -7.60 16 18 N -0.58 -8.23 2.95 -122.73 -0.36 -8.59 16 19 C 0.07 0.79 10.65 59.84 0.64 1.43 16 20 C 0.54 9.16 7.71 -11.08 -0.09 9.08 16 21 O -0.46 -9.66 17.34 5.60 0.10 -9.56 16 22 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 23 H 0.06 1.27 5.06 -51.93 -0.26 1.00 16 24 H 0.02 0.35 7.59 -51.93 -0.39 -0.04 16 25 H 0.27 8.20 8.73 -40.82 -0.36 7.84 16 26 H 0.34 5.63 7.74 -39.29 -0.30 5.33 16 27 H 0.12 1.26 7.56 -51.93 -0.39 0.87 16 28 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 0.94 7.41 -51.93 -0.38 0.55 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 262.41 15.07 3.95 3.95 Total: -1.00 -33.41 262.41 -4.47 -37.88 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.78 Total: 1.69 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.17 Total: 1.37 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.22 Total: -48.61 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.19 Total: -17.15 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -4.45 Total: 20.87 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.41 -4.47 -37.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114650615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.008 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds