Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46575 * 2 1 4 4 C 1.50701 * 109.46959 * 119.99895 * 2 1 3 5 5 H 1.08000 * 119.99844 * 114.48912 * 4 2 1 6 6 C 1.37878 * 120.00013 * 294.48441 * 4 2 1 7 7 N 1.31513 * 119.99904 * 164.79338 * 6 4 2 8 8 Si 1.86800 * 120.00170 * 344.80069 * 6 4 2 9 9 H 1.48508 * 109.46507 * 269.99767 * 8 6 4 10 10 H 1.48498 * 109.47254 * 29.99240 * 8 6 4 11 11 H 1.48491 * 109.47364 * 149.99733 * 8 6 4 12 12 N 1.46897 * 109.47036 * 240.00174 * 2 1 3 13 13 C 1.46899 * 111.00162 * 85.00033 * 12 2 1 14 14 H 1.08998 * 110.54121 * 327.84359 * 13 12 2 15 15 C 1.54230 * 110.60429 * 204.99664 * 13 12 2 16 16 C 1.51310 * 103.55487 * 241.47980 * 15 13 12 17 17 O 1.21231 * 125.39867 * 179.97438 * 16 15 13 18 18 N 1.33877 * 109.21050 * 0.02562 * 16 15 13 19 19 C 1.46496 * 122.76422 * 179.97438 * 18 16 15 20 20 C 1.33878 * 114.47260 * 0.02562 * 18 16 15 21 21 O 1.21227 * 125.39495 * 180.02562 * 20 18 16 22 22 H 1.09001 * 109.47164 * 173.54847 * 1 2 3 23 23 H 1.08994 * 109.47265 * 293.54819 * 1 2 3 24 24 H 1.09002 * 109.47128 * 53.55570 * 1 2 3 25 25 H 0.97003 * 119.99945 * 354.90540 * 7 6 4 26 26 H 1.00901 * 111.00455 * 321.04394 * 12 2 1 27 27 H 1.08996 * 110.60996 * 0.02562 * 15 13 12 28 28 H 1.09007 * 110.60686 * 122.81095 * 15 13 12 29 29 H 1.08998 * 109.47334 * 0.02724 * 19 18 16 30 30 H 1.08998 * 109.47329 * 120.03195 * 19 18 16 31 31 H 1.09001 * 109.47279 * 240.02855 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5778 -1.6375 1.1339 6 6 1.7955 -0.1767 2.4796 7 7 1.9582 -0.9186 3.5532 8 14 1.2434 1.5999 2.6469 9 1 2.4342 2.4787 2.7704 10 1 0.4623 1.9908 1.4459 11 1 0.3951 1.7428 3.8572 12 7 2.0196 -0.6924 -1.1994 13 6 2.0824 0.2226 -2.3469 14 1 1.2942 0.9726 -2.2815 15 6 1.9784 -0.5601 -3.6717 16 6 3.2906 -0.2622 -4.3637 17 8 3.6245 -0.6871 -5.4488 18 7 4.0249 0.5441 -3.5872 19 6 5.3559 1.0195 -3.9727 20 6 3.4432 0.8794 -2.4289 21 8 3.9289 1.5969 -1.5811 22 1 -0.3633 -1.0212 -0.1155 23 1 -0.3633 0.4105 0.9420 24 1 -0.3633 0.6105 -0.8267 25 1 2.1727 -1.8604 3.4640 26 1 1.4496 -1.4979 -1.4101 27 1 1.8796 -1.6284 -3.4794 28 1 1.1383 -0.1995 -4.2654 29 1 5.6164 0.6165 -4.9513 30 1 5.3540 2.1086 -4.0171 31 1 6.0877 0.6873 -3.2364 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114650615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = -82.924277 kcal Electronic energy + Delta-G solvation = -15962.082598 eV Core-core repulsion = 13242.969997 eV Total energy + Delta-G solvation = -2719.112600 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.87142 -39.71703 -38.03099 -36.84728 -34.99306 -33.22162 -29.98886 -27.82784 -26.78169 -26.17313 -23.10238 -22.13434 -20.42224 -19.62748 -18.28191 -18.11767 -17.48531 -16.38594 -16.21565 -15.72550 -15.33197 -15.26296 -15.02985 -14.56313 -14.08659 -13.91989 -13.73709 -13.52257 -13.37051 -12.91170 -12.71125 -12.36319 -11.92627 -11.61698 -11.39873 -11.25499 -10.97169 -10.85108 -10.44389 -9.29651 -8.65991 -6.28390 0.45823 1.47057 1.49818 1.54289 1.70320 1.72548 2.52086 3.02579 3.12330 3.22994 3.33868 3.64572 4.17254 4.22400 4.36118 4.44679 4.53271 4.59278 4.67276 4.72428 4.75018 4.80103 5.12634 5.51275 5.74686 5.80916 6.12255 6.26260 6.31645 6.60810 6.74514 6.75632 7.47784 8.70406 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.040665 B = 0.007855 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.388512 B = 3563.798642 C = 3797.184569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.188 3.812 3 H 0.027 0.973 4 C -0.580 4.580 5 H 0.021 0.979 6 C -0.024 4.024 7 N -0.946 5.946 8 Si 1.079 2.921 9 H -0.289 1.289 10 H -0.231 1.231 11 H -0.285 1.285 12 N -0.670 5.670 13 C 0.050 3.950 14 H 0.115 0.885 15 C -0.141 4.141 16 C 0.538 3.462 17 O -0.516 6.516 18 N -0.578 5.578 19 C 0.061 3.939 20 C 0.532 3.468 21 O -0.510 6.510 22 H 0.054 0.946 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.252 0.748 26 H 0.357 0.643 27 H 0.141 0.859 28 H 0.163 0.837 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 4.228 -17.497 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.078 3.922 3 H 0.045 0.955 4 C -0.619 4.619 5 H 0.039 0.961 6 C -0.221 4.221 7 N -0.583 5.583 8 Si 0.901 3.099 9 H -0.216 1.216 10 H -0.154 1.154 11 H -0.211 1.211 12 N -0.305 5.305 13 C -0.064 4.064 14 H 0.132 0.868 15 C -0.181 4.181 16 C 0.329 3.671 17 O -0.390 6.390 18 N -0.321 5.321 19 C -0.080 4.080 20 C 0.320 3.680 21 O -0.382 6.382 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.179 0.821 27 H 0.158 0.842 28 H 0.180 0.820 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.758 5.638 -16.369 17.402 hybrid contribution 0.236 -1.491 -0.616 1.631 sum -1.522 4.146 -16.985 17.550 Atomic orbital electron populations 1.22703 0.97958 1.01331 1.01063 1.19477 0.91015 0.93960 0.87712 0.95465 1.22171 1.37661 1.09379 0.92674 0.96086 1.27025 0.94637 1.08490 0.91951 1.70927 1.47844 1.07665 1.31900 0.83717 0.77319 0.71386 0.77508 1.21614 1.15382 1.21137 1.60299 1.59472 1.08919 1.01836 1.22335 0.93860 0.97472 0.92692 0.86783 1.22812 0.96324 1.05173 0.93751 1.21096 0.87271 0.75226 0.83507 1.90742 1.76033 1.51990 1.20250 1.46765 1.19809 1.45562 1.20003 1.22055 0.81373 1.01650 1.02888 1.21465 0.88623 0.78604 0.79303 1.90733 1.69800 1.36264 1.41355 0.92647 0.93759 0.91771 0.93911 0.82080 0.84160 0.81966 0.87825 0.89571 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.20 8.45 71.98 0.61 -5.60 16 2 C 0.19 8.16 1.99 44.17 0.09 8.25 16 3 H 0.03 1.27 6.15 -2.39 -0.01 1.26 16 4 C -0.58 -32.66 9.13 25.60 0.23 -32.43 16 5 H 0.02 1.32 8.06 -2.91 -0.02 1.29 16 6 C -0.02 -1.39 5.33 84.66 0.45 -0.94 16 7 N -0.95 -60.09 13.70 21.45 0.29 -59.80 16 8 Si 1.08 50.59 26.17 68.60 1.80 52.39 16 9 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.23 -9.13 5.54 99.48 0.55 -8.58 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 N -0.67 -23.58 6.07 -474.01 -2.88 -26.45 16 13 C 0.05 1.32 3.18 44.78 0.14 1.47 16 14 H 0.11 2.62 7.27 -2.39 -0.02 2.60 16 15 C -0.14 -2.47 6.70 30.46 0.20 -2.27 16 16 C 0.54 12.80 8.08 87.99 0.71 13.51 16 17 O -0.52 -14.42 17.23 -2.88 -0.05 -14.47 16 18 N -0.58 -15.34 2.95 -780.04 -2.30 -17.64 16 19 C 0.06 1.35 10.65 127.77 1.36 2.71 16 20 C 0.53 17.23 7.71 87.99 0.68 17.91 16 21 O -0.51 -21.22 17.34 -2.87 -0.05 -21.27 16 22 H 0.05 1.90 8.01 -2.39 -0.02 1.88 16 23 H 0.04 1.73 5.06 -2.39 -0.01 1.72 16 24 H 0.06 1.79 7.59 -2.39 -0.02 1.77 16 25 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 26 H 0.36 10.68 7.74 -89.69 -0.69 9.98 16 27 H 0.14 2.15 7.56 -2.39 -0.02 2.13 16 28 H 0.16 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.10 1.99 7.41 -2.39 -0.02 1.97 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -75.42 262.41 1.55 -73.87 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.26 Total: 10.76 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.48 Total: 2.62 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -4.89 Total: -103.90 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.10 Total: -35.74 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.80 Total: 52.39 kcal Total: -75.42 1.55 -73.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114650615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.051 kcal (2) G-P(sol) polarization free energy of solvation -75.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds