Wall clock time and date at job start Mon Mar 30 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 N 1.46492 * 109.47213 * 120.00217 * 2 1 3 5 5 C 1.34771 * 120.00121 * 275.00112 * 4 2 1 6 6 O 1.21684 * 120.00304 * 359.97438 * 5 4 2 7 7 C 1.46379 * 120.00374 * 179.97438 * 5 4 2 8 8 H 1.08007 * 119.99622 * 0.02562 * 7 5 4 9 9 C 1.40045 * 120.00584 * 179.97438 * 7 5 4 10 10 N 1.30675 * 119.99474 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00470 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46817 * 60.00661 * 11 9 7 13 13 H 1.48499 * 109.47461 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46973 * 300.00788 * 11 9 7 15 15 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 16 16 O 1.21283 * 119.99488 * 239.99768 * 15 2 1 17 17 N 1.34777 * 120.00290 * 60.00208 * 15 2 1 18 18 C 1.46498 * 119.99828 * 180.27728 * 17 15 2 19 19 C 1.52996 * 117.49788 * 223.46917 * 18 17 15 20 20 C 1.53005 * 117.50003 * 154.80791 * 18 17 15 21 21 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 23 23 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 24 24 H 0.97006 * 119.99994 * 94.99867 * 4 2 1 25 25 H 0.97003 * 119.99319 * 179.97438 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 17 15 2 27 27 H 1.09004 * 115.55144 * 9.13400 * 18 17 15 28 28 H 1.09004 * 117.49811 * 0.02562 * 19 18 17 29 29 H 1.08995 * 117.50167 * 145.01896 * 19 18 17 30 30 H 1.08995 * 117.50170 * 214.97748 * 20 18 17 31 31 H 1.09004 * 117.49249 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8581 1.1624 2.4117 7 6 2.6345 -0.7085 3.5524 8 1 2.8914 -1.7565 3.5038 9 6 2.7687 -0.0099 4.7586 10 7 2.4584 1.2581 4.8172 11 14 3.3901 -0.8908 6.2842 12 1 4.7509 -1.4265 6.0266 13 1 3.4402 0.0634 7.4209 14 1 2.4726 -2.0098 6.6178 15 6 2.0323 -0.7103 -1.2306 16 8 2.7295 -1.6964 -1.1193 17 7 1.7067 -0.2498 -2.4546 18 6 2.1900 -0.9439 -3.6508 19 6 2.7254 -0.0850 -4.7981 20 6 1.3734 -0.7896 -4.9355 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 2.2490 -1.6318 1.1525 25 1 2.5511 1.7420 5.6529 26 1 1.1488 0.5387 -2.5436 27 1 2.6730 -1.9050 -3.4738 28 1 2.7185 0.9966 -4.6627 29 1 3.5603 -0.4810 -5.3761 30 1 1.3195 -1.6489 -5.6039 31 1 0.4764 -0.1719 -4.8905 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162537628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:57 Heat of formation + Delta-G solvation = -54.687285 kcal Electronic energy + Delta-G solvation = -15316.212779 eV Core-core repulsion = 12598.324626 eV Total energy + Delta-G solvation = -2717.888152 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.82351 -37.56059 -36.71366 -33.82317 -32.72696 -32.23187 -29.50468 -26.11074 -24.32175 -22.58582 -21.82747 -20.50606 -19.28745 -17.90286 -16.64380 -16.18501 -15.36741 -14.90239 -14.72962 -14.45367 -13.92598 -13.30316 -12.92984 -12.79399 -12.33863 -11.98022 -11.79824 -11.69185 -11.44101 -11.14614 -11.02598 -10.81132 -10.69331 -10.42515 -10.23475 -9.48341 -8.83187 -8.76592 -7.64741 -7.57009 -6.17893 -4.62255 2.77336 3.09284 3.19205 3.23374 3.26413 3.77520 4.13561 4.58358 4.61739 4.78362 4.81878 4.85252 4.94767 5.40902 5.55928 5.61654 5.70427 5.81325 5.86591 5.96159 5.98696 6.32083 6.51322 6.65986 7.45767 7.50394 7.96835 8.06652 8.34850 8.38345 9.04226 9.53812 10.59883 10.77778 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.061039 B = 0.005380 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.613034 B = 5203.657906 C = 5397.106979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.138 3.862 3 H 0.102 0.898 4 N -0.749 5.749 5 C 0.557 3.443 6 O -0.582 6.582 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.088 3.912 10 N -0.769 5.769 11 Si 0.909 3.091 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.517 3.483 16 O -0.534 6.534 17 N -0.706 5.706 18 C 0.083 3.917 19 C -0.196 4.196 20 C -0.192 4.192 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.391 0.609 25 H 0.269 0.731 26 H 0.402 0.598 27 H 0.136 0.864 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -2.608 -14.725 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 H 0.120 0.880 4 N -0.406 5.406 5 C 0.362 3.638 6 O -0.465 6.465 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.734 3.266 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.193 1.193 15 C 0.304 3.696 16 O -0.409 6.409 17 N -0.357 5.357 18 C -0.023 4.023 19 C -0.235 4.235 20 C -0.230 4.230 21 H 0.073 0.927 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.224 0.776 25 H 0.079 0.921 26 H 0.237 0.763 27 H 0.154 0.846 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.575 -2.282 -14.436 14.840 hybrid contribution 0.134 -0.425 0.490 0.662 sum -2.440 -2.707 -13.946 14.414 Atomic orbital electron populations 1.22143 0.94640 1.02002 1.02471 1.20332 0.94459 0.98090 0.84371 0.88023 1.46038 1.72973 1.13653 1.07921 1.18227 0.77791 0.86345 0.81436 1.90584 1.55144 1.16337 1.84481 1.20840 1.46578 0.97302 0.93131 0.91308 1.25699 0.93293 0.94479 0.99696 1.70014 1.35184 1.08177 1.26365 0.86407 0.79967 0.79683 0.80543 1.19241 1.20581 1.19252 1.21292 0.79219 0.84428 0.84655 1.90649 1.37321 1.26370 1.86542 1.45431 1.53932 1.31756 1.04614 1.21565 1.01717 0.98394 0.80640 1.23429 0.97469 0.99707 1.02878 1.23376 0.95488 1.03693 1.00462 0.92674 0.90461 0.92927 0.77557 0.92074 0.76317 0.84593 0.88473 0.88142 0.88052 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.38 37.16 0.35 -2.18 16 2 C 0.14 2.65 2.98 -69.08 -0.21 2.45 16 3 H 0.10 2.08 7.58 -51.93 -0.39 1.69 16 4 N -0.75 -17.69 4.95 -56.35 -0.28 -17.97 16 5 C 0.56 16.04 7.71 -12.99 -0.10 15.94 16 6 O -0.58 -18.51 14.68 5.20 0.08 -18.44 16 7 C -0.54 -15.64 9.54 -35.63 -0.34 -15.98 16 8 H 0.07 1.85 7.85 -52.48 -0.41 1.44 16 9 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 10 N -0.77 -23.07 11.83 55.55 0.66 -22.41 16 11 Si 0.91 20.45 29.56 -169.99 -5.02 15.42 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 C 0.52 8.92 7.22 -10.98 -0.08 8.84 16 16 O -0.53 -10.90 15.40 5.55 0.09 -10.81 16 17 N -0.71 -9.01 5.46 -53.80 -0.29 -9.31 16 18 C 0.08 0.94 6.43 -67.93 -0.44 0.50 16 19 C -0.20 -1.75 10.46 -26.69 -0.28 -2.03 16 20 C -0.19 -1.58 10.46 -26.69 -0.28 -1.86 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 23 H 0.05 0.65 7.56 -51.92 -0.39 0.26 16 24 H 0.39 8.91 7.77 -40.82 -0.32 8.60 16 25 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 26 H 0.40 4.09 8.24 -40.82 -0.34 3.75 16 27 H 0.14 1.73 7.40 -51.93 -0.38 1.35 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 276.43 15.07 4.17 4.17 Total: -1.00 -35.00 276.43 -5.99 -40.99 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -3.91 Total: 10.29 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -1.47 Total: 8.07 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.08 Total: -49.69 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: 0.16 Total: -29.25 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -35.00 -5.99 -40.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162537628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.700 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds