Wall clock time and date at job start Mon Mar 30 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 N 1.46492 * 109.47213 * 120.00217 * 2 1 3 5 5 C 1.34771 * 120.00121 * 275.00112 * 4 2 1 6 6 O 1.21684 * 120.00304 * 359.97438 * 5 4 2 7 7 C 1.46379 * 120.00374 * 179.97438 * 5 4 2 8 8 H 1.08007 * 119.99622 * 0.02562 * 7 5 4 9 9 C 1.40045 * 120.00584 * 179.97438 * 7 5 4 10 10 N 1.30675 * 119.99474 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00470 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46817 * 60.00661 * 11 9 7 13 13 H 1.48499 * 109.47461 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46973 * 300.00788 * 11 9 7 15 15 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 16 16 O 1.21283 * 119.99488 * 239.99768 * 15 2 1 17 17 N 1.34777 * 120.00290 * 60.00208 * 15 2 1 18 18 C 1.46498 * 119.99828 * 180.27728 * 17 15 2 19 19 C 1.52996 * 117.49788 * 223.46917 * 18 17 15 20 20 C 1.53005 * 117.50003 * 154.80791 * 18 17 15 21 21 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 23 23 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 24 24 H 0.97006 * 119.99994 * 94.99867 * 4 2 1 25 25 H 0.97003 * 119.99319 * 179.97438 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 17 15 2 27 27 H 1.09004 * 115.55144 * 9.13400 * 18 17 15 28 28 H 1.09004 * 117.49811 * 0.02562 * 19 18 17 29 29 H 1.08995 * 117.50167 * 145.01896 * 19 18 17 30 30 H 1.08995 * 117.50170 * 214.97748 * 20 18 17 31 31 H 1.09004 * 117.49249 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8581 1.1624 2.4117 7 6 2.6345 -0.7085 3.5524 8 1 2.8914 -1.7565 3.5038 9 6 2.7687 -0.0099 4.7586 10 7 2.4584 1.2581 4.8172 11 14 3.3901 -0.8908 6.2842 12 1 4.7509 -1.4265 6.0266 13 1 3.4402 0.0634 7.4209 14 1 2.4726 -2.0098 6.6178 15 6 2.0323 -0.7103 -1.2306 16 8 2.7295 -1.6964 -1.1193 17 7 1.7067 -0.2498 -2.4546 18 6 2.1900 -0.9439 -3.6508 19 6 2.7254 -0.0850 -4.7981 20 6 1.3734 -0.7896 -4.9355 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 2.2490 -1.6318 1.1525 25 1 2.5511 1.7420 5.6529 26 1 1.1488 0.5387 -2.5436 27 1 2.6730 -1.9050 -3.4738 28 1 2.7185 0.9966 -4.6627 29 1 3.5603 -0.4810 -5.3761 30 1 1.3195 -1.6489 -5.6039 31 1 0.4764 -0.1719 -4.8905 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162537628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:57 Heat of formation + Delta-G solvation = -82.383887 kcal Electronic energy + Delta-G solvation = -15317.413793 eV Core-core repulsion = 12598.324626 eV Total energy + Delta-G solvation = -2719.089167 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19704 -39.28697 -38.00144 -35.61450 -34.52477 -33.88121 -31.21594 -28.20372 -25.74070 -23.25386 -23.07489 -21.92674 -21.08023 -19.72816 -17.96382 -17.73909 -17.26287 -16.49394 -16.12457 -15.76269 -15.37707 -14.93382 -14.67123 -14.29520 -13.73571 -13.54795 -13.32967 -13.02362 -12.73317 -12.62948 -12.55528 -12.44229 -12.33389 -12.04471 -11.46522 -10.93954 -10.91794 -9.90863 -9.79155 -9.56046 -8.30614 -6.87048 1.40321 1.42225 1.44086 1.55198 1.91180 2.26584 2.46126 2.99390 3.08043 3.57583 3.62913 3.81480 4.07514 4.08885 4.15408 4.27641 4.67293 4.78077 4.78754 4.85454 5.03872 5.23003 5.23162 5.31265 5.47232 5.85953 6.08423 6.22087 6.44783 6.85687 7.10153 7.46795 8.44947 8.64732 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.061039 B = 0.005380 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.613034 B = 5203.657906 C = 5397.106979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.131 3.869 3 H 0.086 0.914 4 N -0.745 5.745 5 C 0.544 3.456 6 O -0.623 6.623 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.033 3.967 10 N -0.817 5.817 11 Si 0.997 3.003 12 H -0.258 1.258 13 H -0.270 1.270 14 H -0.255 1.255 15 C 0.523 3.477 16 O -0.571 6.571 17 N -0.683 5.683 18 C 0.045 3.955 19 C -0.186 4.186 20 C -0.164 4.164 21 H 0.061 0.939 22 H 0.045 0.955 23 H 0.099 0.901 24 H 0.394 0.606 25 H 0.276 0.724 26 H 0.417 0.583 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -3.316 -15.847 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.022 3.978 3 H 0.104 0.896 4 N -0.400 5.400 5 C 0.349 3.651 6 O -0.510 6.510 7 C -0.612 4.612 8 H 0.099 0.901 9 C -0.183 4.183 10 N -0.447 5.447 11 Si 0.817 3.183 12 H -0.182 1.182 13 H -0.194 1.194 14 H -0.179 1.179 15 C 0.310 3.690 16 O -0.450 6.450 17 N -0.335 5.335 18 C -0.060 4.060 19 C -0.224 4.224 20 C -0.202 4.202 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.118 0.882 24 H 0.228 0.772 25 H 0.086 0.914 26 H 0.254 0.746 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.884 -2.988 -15.652 16.193 hybrid contribution 0.200 -0.175 0.677 0.728 sum -2.684 -3.164 -14.974 15.538 Atomic orbital electron populations 1.22033 0.92240 1.02663 1.03193 1.20532 0.96324 0.96993 0.83975 0.89579 1.45754 1.72239 1.13656 1.08336 1.18492 0.77613 0.86062 0.82970 1.90535 1.56991 1.17928 1.85568 1.21377 1.47415 0.98215 0.94237 0.90083 1.26911 0.92726 0.95187 1.03473 1.70157 1.36243 1.10323 1.27935 0.85078 0.79581 0.78450 0.75230 1.18208 1.19440 1.17874 1.20760 0.79065 0.83870 0.85331 1.90634 1.39253 1.28054 1.87089 1.45177 1.52880 1.31693 1.03701 1.21701 1.04971 0.98496 0.80869 1.23520 0.98545 0.99791 1.00592 1.23487 0.95552 1.03925 0.97209 0.91981 0.93622 0.88241 0.77189 0.91401 0.74576 0.86549 0.87840 0.87159 0.86514 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.38 71.98 0.68 -3.94 16 2 C 0.13 5.12 2.98 44.25 0.13 5.25 16 3 H 0.09 3.63 7.58 -2.39 -0.02 3.62 16 4 N -0.74 -36.24 4.95 -450.42 -2.23 -38.47 16 5 C 0.54 32.42 7.71 86.36 0.67 33.09 16 6 O -0.62 -41.30 14.68 -4.30 -0.06 -41.36 16 7 C -0.58 -33.95 9.54 24.83 0.24 -33.71 16 8 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.03 1.85 5.50 85.30 0.47 2.32 16 10 N -0.82 -50.18 11.83 21.84 0.26 -49.92 16 11 Si 1.00 41.91 29.56 68.60 2.03 43.93 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 13 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 14 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 15 C 0.52 17.93 7.22 87.66 0.63 18.56 16 16 O -0.57 -23.64 15.40 -3.04 -0.05 -23.69 16 17 N -0.68 -16.35 5.46 -442.53 -2.42 -18.77 16 18 C 0.05 0.94 6.43 44.99 0.29 1.23 16 19 C -0.19 -2.79 10.46 30.62 0.32 -2.47 16 20 C -0.16 -2.12 10.46 30.62 0.32 -1.80 16 21 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 22 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.10 2.24 7.56 -2.38 -0.02 2.22 16 24 H 0.39 18.48 7.77 -92.70 -0.72 17.76 16 25 H 0.28 15.31 8.29 -92.71 -0.77 14.54 16 26 H 0.42 7.40 8.24 -92.71 -0.76 6.64 16 27 H 0.12 2.92 7.40 -2.39 -0.02 2.91 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -78.86 276.43 0.95 -77.91 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.33 Total: 31.83 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 3.74 Total: 18.53 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -4.39 Total: -107.15 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -0.11 Total: -65.05 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -78.86 0.95 -77.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162537628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.475 kcal (2) G-P(sol) polarization free energy of solvation -78.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds