Wall clock time and date at job start Mon Mar 30 2020 02:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47168 * 2 1 4 4 N 1.46501 * 109.47620 * 120.00296 * 2 1 3 5 5 C 1.46345 * 119.90126 * 120.03984 * 4 2 1 6 6 C 1.52624 * 110.49136 * 142.56116 * 5 4 2 7 7 N 1.46327 * 110.49574 * 51.36038 * 6 5 4 8 8 C 1.36123 * 119.90335 * 142.57711 * 7 6 5 9 9 H 1.08004 * 119.99704 * 205.78441 * 8 7 6 10 10 C 1.39584 * 120.00064 * 25.78588 * 8 7 6 11 11 N 1.31015 * 120.00026 * 11.94368 * 10 8 7 12 12 Si 1.86804 * 119.99842 * 191.93464 * 10 8 7 13 13 H 1.48496 * 109.47074 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46789 * 120.00127 * 12 10 8 15 15 H 1.48497 * 109.47272 * 239.99887 * 12 10 8 16 16 C 1.34782 * 120.18830 * 322.55104 * 7 6 5 17 17 O 1.21498 * 120.42843 * 185.96797 * 16 7 6 18 18 C 1.34784 * 119.90692 * 300.00030 * 4 2 1 19 19 O 1.21442 * 120.42326 * 6.01531 * 18 4 2 20 20 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.46924 * 299.99387 * 1 2 3 22 22 H 1.08996 * 109.47119 * 59.99608 * 1 2 3 23 23 H 1.09008 * 109.46924 * 240.00613 * 2 1 3 24 24 H 1.08994 * 109.47193 * 179.97438 * 3 2 1 25 25 H 1.08990 * 109.47453 * 300.00659 * 3 2 1 26 26 H 1.09008 * 109.46697 * 60.00474 * 3 2 1 27 27 H 1.08996 * 109.27469 * 22.29973 * 5 4 2 28 28 H 1.09002 * 109.26899 * 262.81696 * 5 4 2 29 29 H 1.09006 * 109.27037 * 291.10031 * 6 5 4 30 30 H 1.09000 * 109.27082 * 171.62355 * 6 5 4 31 31 H 0.97001 * 119.99895 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8604 -1.8798 1.0592 6 6 3.9382 -1.8986 2.1397 7 7 3.3414 -1.7075 3.4620 8 6 3.8346 -2.3865 4.5337 9 1 3.1987 -2.5918 5.3822 10 6 5.1623 -2.8175 4.5361 11 7 5.9961 -2.3753 3.6275 12 14 5.7501 -4.0244 5.8351 13 1 4.6224 -4.3678 6.7382 14 1 6.2485 -5.2579 5.1752 15 1 6.8465 -3.4075 6.6240 16 6 2.3050 -0.8607 3.6219 17 8 1.8759 -0.6160 4.7319 18 6 1.6918 -0.2286 2.4194 19 8 0.9073 0.6906 2.5403 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8898 26 1 1.6767 1.9563 0.8901 27 1 3.3349 -1.8736 0.0779 28 1 2.2411 -2.7718 1.1533 29 1 4.6532 -1.0983 1.9487 30 1 4.4566 -2.8571 2.1141 31 1 6.9189 -2.6745 3.6294 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166589198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:52 Heat of formation + Delta-G solvation = -55.385306 kcal Electronic energy + Delta-G solvation = -16398.689702 eV Core-core repulsion = 13680.771281 eV Total energy + Delta-G solvation = -2717.918421 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19552 -37.63457 -36.32606 -34.49879 -32.92544 -31.11115 -28.47819 -26.95714 -26.09832 -23.24073 -22.81057 -20.72076 -18.19442 -17.16822 -16.72006 -15.87983 -15.39306 -14.96146 -14.35210 -14.02474 -13.66925 -13.43210 -13.21721 -12.85789 -12.38756 -12.24870 -11.88416 -11.66928 -11.48043 -11.18884 -11.07015 -11.00180 -10.76020 -10.47369 -10.38648 -9.91661 -9.20702 -8.38162 -8.21396 -7.90598 -6.58212 -4.09157 2.45724 3.09274 3.15805 3.22221 3.32425 3.94308 4.26763 4.51025 4.92083 5.05573 5.29194 5.31373 5.40822 5.46375 5.76100 5.81610 5.84487 5.92379 6.03710 6.11091 6.39964 6.52481 6.58502 6.87898 6.98085 7.33440 7.61235 7.92135 8.24037 8.55957 8.97177 9.13045 9.75027 10.45554 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.046753 B = 0.008566 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.749212 B = 3267.985752 C = 3586.574642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 C -0.168 4.168 4 N -0.609 5.609 5 C 0.091 3.909 6 C 0.117 3.883 7 N -0.413 5.413 8 C -0.309 4.309 9 H 0.104 0.896 10 C 0.036 3.964 11 N -0.868 5.868 12 Si 0.931 3.069 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.278 1.278 16 C 0.421 3.579 17 O -0.551 6.551 18 C 0.520 3.480 19 O -0.518 6.518 20 H 0.051 0.949 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -1.198 -10.328 10.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.038 3.962 3 C -0.226 4.226 4 N -0.348 5.348 5 C -0.032 4.032 6 C -0.007 4.007 7 N -0.135 5.135 8 C -0.438 4.438 9 H 0.122 0.878 10 C -0.170 4.170 11 N -0.506 5.506 12 Si 0.757 3.243 13 H -0.189 1.189 14 H -0.203 1.203 15 H -0.204 1.204 16 C 0.206 3.794 17 O -0.433 6.433 18 C 0.305 3.695 19 O -0.392 6.392 20 H 0.071 0.929 21 H 0.100 0.900 22 H 0.077 0.923 23 H 0.101 0.899 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.145 -0.600 -9.746 9.997 hybrid contribution 0.619 -0.621 0.309 0.929 sum -1.526 -1.221 -9.437 9.637 Atomic orbital electron populations 1.22240 0.95098 1.02063 1.03396 1.21033 0.94647 0.93361 0.87145 1.22180 1.01154 0.96221 1.03071 1.48391 1.51286 1.29393 1.05682 1.22158 0.93107 0.87070 1.00880 1.21689 0.92904 1.05306 0.80820 1.43561 1.27913 1.34183 1.07813 1.19799 0.95189 1.30035 0.98742 0.87820 1.25542 0.95113 0.98196 0.98151 1.69771 1.05169 1.41021 1.34618 0.85772 0.78992 0.79345 0.80183 1.18884 1.20337 1.20419 1.19663 0.87103 0.83854 0.88784 1.90627 1.65378 1.62836 1.24430 1.20915 0.81211 0.83672 0.83673 1.90586 1.33472 1.29260 1.85881 0.92946 0.89979 0.92300 0.89919 0.92581 0.92051 0.90737 0.89395 0.91834 0.91149 0.87347 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.12 37.16 0.34 -2.06 16 2 C 0.14 2.04 3.27 -67.93 -0.22 1.82 16 3 C -0.17 -2.41 9.12 37.16 0.34 -2.07 16 4 N -0.61 -10.93 2.76 -167.10 -0.46 -11.39 16 5 C 0.09 1.46 6.56 -4.32 -0.03 1.43 16 6 C 0.12 2.39 4.88 -4.33 -0.02 2.37 16 7 N -0.41 -10.41 2.92 -115.83 -0.34 -10.75 16 8 C -0.31 -8.26 9.17 -15.15 -0.14 -8.40 16 9 H 0.10 2.91 7.54 -52.48 -0.40 2.51 16 10 C 0.04 0.89 5.03 -17.40 -0.09 0.80 16 11 N -0.87 -21.36 10.84 55.53 0.60 -20.76 16 12 Si 0.93 19.40 29.57 -169.99 -5.03 14.37 16 13 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 14 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 16 C 0.42 11.20 7.54 -11.77 -0.09 11.11 16 17 O -0.55 -16.79 16.78 -10.42 -0.17 -16.96 16 18 C 0.52 11.92 6.98 -11.77 -0.08 11.84 16 19 O -0.52 -12.68 13.29 -10.37 -0.14 -12.82 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.08 1.42 5.98 -51.92 -0.31 1.11 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.94 7.68 -51.92 -0.40 0.55 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.30 6.39 -51.92 -0.33 0.96 16 27 H 0.09 1.07 7.74 -51.93 -0.40 0.67 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.52 7.93 -51.93 -0.41 1.10 16 30 H 0.11 2.25 6.61 -51.93 -0.34 1.91 16 31 H 0.27 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 258.04 15.07 3.89 3.89 Total: -1.00 -31.38 258.04 -5.48 -36.86 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -3.84 Total: 0.73 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 0.01 Total: 16.83 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.20 Total: -42.90 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.31 Total: -29.78 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.38 -5.48 -36.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166589198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.527 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds