Wall clock time and date at job start Mon Mar 30 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.54867 * 2 1 4 4 C 1.52999 * 117.50101 * 214.33387 * 2 1 3 5 5 C 1.52996 * 117.50050 * 145.67246 * 2 1 3 6 6 H 1.09004 * 117.49890 * 359.97438 * 5 2 1 7 7 C 1.53008 * 117.50032 * 215.00485 * 5 2 1 8 8 N 1.46490 * 109.47410 * 174.99929 * 7 5 2 9 9 C 1.34777 * 120.00123 * 179.97438 * 8 7 5 10 10 O 1.21444 * 120.00138 * 0.02562 * 9 8 7 11 11 C 1.48834 * 120.00259 * 179.97438 * 9 8 7 12 12 O 1.21506 * 119.99486 * 359.97438 * 11 9 8 13 13 N 1.34769 * 120.00074 * 180.02562 * 11 9 8 14 14 C 1.36128 * 119.99818 * 179.97438 * 13 11 9 15 15 H 1.07999 * 119.99867 * 0.02562 * 14 13 11 16 16 C 1.39590 * 119.99640 * 179.97438 * 14 13 11 17 17 N 1.31013 * 119.99541 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00213 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47446 * 89.99538 * 18 16 14 20 20 H 1.48499 * 109.47040 * 209.99751 * 18 16 14 21 21 H 1.48504 * 109.47146 * 329.99632 * 18 16 14 22 22 H 1.09002 * 109.47153 * 274.41543 * 1 2 3 23 23 H 1.09001 * 109.46832 * 154.41734 * 1 2 3 24 24 H 1.09004 * 109.47261 * 34.41715 * 1 2 3 25 25 H 1.08998 * 117.49862 * 359.97438 * 4 2 1 26 26 H 1.09000 * 117.50295 * 145.02180 * 4 2 1 27 27 H 1.09006 * 109.46715 * 294.99699 * 7 5 2 28 28 H 1.09000 * 109.46797 * 54.99388 * 7 5 2 29 29 H 0.97001 * 119.99875 * 359.97438 * 8 7 5 30 30 H 0.97000 * 120.00376 * 0.02562 * 13 11 9 31 31 H 0.97001 * 120.00227 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2364 -1.1207 0.7653 6 1 1.6112 -1.8579 1.2692 7 6 3.5487 -0.7753 1.4722 8 7 4.0083 -1.9337 2.2422 9 6 5.1523 -1.8609 2.9510 10 8 5.8020 -0.8348 2.9517 11 6 5.6189 -3.0376 3.7338 12 8 4.9682 -4.0637 3.7342 13 7 6.7626 -2.9646 4.4430 14 6 7.1891 -4.0407 5.1594 15 1 6.6112 -4.9530 5.1590 16 6 8.3740 -3.9652 5.8935 17 7 8.7847 -5.0011 6.5825 18 14 9.3739 -2.3874 5.8934 19 1 8.9208 -1.5141 7.0056 20 1 10.8116 -2.7126 6.0736 21 1 9.1844 -1.6813 4.6008 22 1 -0.3633 0.0791 1.0246 23 1 -0.3633 -0.9269 -0.4438 24 1 -0.3634 0.8478 -0.5809 25 1 1.6113 -1.8582 -1.2687 26 1 3.1716 -0.8747 -1.2686 27 1 4.3021 -0.5101 0.7303 28 1 3.3883 0.0676 2.1445 29 1 3.4892 -2.7531 2.2419 30 1 7.2815 -2.1450 4.4436 31 1 9.6078 -4.9486 7.0930 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167031817.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:05 Heat of formation + Delta-G solvation = -53.554685 kcal Electronic energy + Delta-G solvation = -14959.991458 eV Core-core repulsion = 12242.152419 eV Total energy + Delta-G solvation = -2717.839039 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.70462 -38.28726 -37.20699 -34.65436 -33.71722 -31.87471 -29.32491 -27.00809 -25.50766 -22.45045 -21.24198 -20.78259 -19.35390 -18.88596 -17.02771 -16.06080 -15.54226 -15.14190 -14.98792 -14.41309 -14.12848 -13.48431 -13.42435 -13.31667 -12.81054 -12.51170 -12.41040 -12.33550 -11.62530 -11.48119 -11.27911 -10.75924 -10.58542 -10.26010 -10.14516 -10.03435 -9.76654 -8.82021 -8.41887 -8.41231 -6.58432 -4.00019 2.30210 3.04730 3.08044 3.10982 3.20598 3.59913 3.96195 4.15939 4.42785 4.62445 4.65106 4.86122 5.04779 5.12871 5.16331 5.39136 5.53378 5.60490 5.63681 5.70339 5.75353 5.79763 6.00380 6.10571 6.67615 7.26661 7.66595 7.92491 8.25065 8.51643 8.74987 9.19760 9.61978 10.51672 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.062803 B = 0.005011 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.730692 B = 5586.378617 C = 5886.895057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.147 4.147 3 H 0.106 0.894 4 C -0.172 4.172 5 C -0.165 4.165 6 H 0.113 0.887 7 C 0.151 3.849 8 N -0.710 5.710 9 C 0.513 3.487 10 O -0.552 6.552 11 C 0.405 3.595 12 O -0.579 6.579 13 N -0.527 5.527 14 C -0.309 4.309 15 H 0.127 0.873 16 C 0.052 3.948 17 N -0.850 5.850 18 Si 0.876 3.124 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.260 1.260 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.412 0.588 30 H 0.384 0.616 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.851 9.652 -10.923 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.165 4.165 3 H 0.124 0.876 4 C -0.209 4.209 5 C -0.183 4.183 6 H 0.131 0.869 7 C 0.027 3.973 8 N -0.363 5.363 9 C 0.297 3.703 10 O -0.430 6.430 11 C 0.189 3.811 12 O -0.465 6.465 13 N -0.164 5.164 14 C -0.439 4.439 15 H 0.145 0.855 16 C -0.156 4.156 17 N -0.487 5.487 18 Si 0.701 3.299 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.184 1.184 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.248 0.752 30 H 0.219 0.781 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.650 9.621 -10.782 17.951 hybrid contribution 0.663 0.712 0.089 0.977 sum -9.988 10.333 -10.692 17.912 Atomic orbital electron populations 1.21372 0.92664 1.01951 1.02023 1.22381 0.95340 0.94666 1.04146 0.87590 1.23270 1.02721 1.01235 0.93673 1.22601 0.98570 1.02800 0.94350 0.86943 1.20861 0.93189 0.88708 0.94512 1.45638 1.24918 1.16869 1.48918 1.20630 0.80891 0.88912 0.79825 1.90676 1.55889 1.32303 1.64103 1.18832 0.85506 0.88684 0.88057 1.90621 1.56854 1.31374 1.67697 1.41824 1.19929 1.14704 1.39939 1.19569 1.07106 0.94112 1.23076 0.85499 1.25234 0.96757 0.97896 0.95692 1.69441 1.22586 1.29427 1.27229 0.86669 0.80590 0.82769 0.79888 1.18887 1.19531 1.18429 0.92047 0.92478 0.92121 0.88592 0.88548 0.91394 0.91135 0.75207 0.78146 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.19 37.16 0.38 -0.52 16 2 C -0.15 -1.26 6.12 -90.62 -0.56 -1.82 16 3 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.17 -1.54 9.83 -26.69 -0.26 -1.80 16 5 C -0.16 -1.69 5.57 -90.58 -0.50 -2.19 16 6 H 0.11 1.12 8.04 -51.93 -0.42 0.71 16 7 C 0.15 1.99 5.96 -4.04 -0.02 1.97 16 8 N -0.71 -11.74 5.55 -60.93 -0.34 -12.08 16 9 C 0.51 10.76 7.87 -11.87 -0.09 10.67 16 10 O -0.55 -12.33 16.47 5.42 0.09 -12.24 16 11 C 0.40 9.94 7.82 -11.88 -0.09 9.85 16 12 O -0.58 -15.44 16.03 5.36 0.09 -15.36 16 13 N -0.53 -13.48 5.06 -11.59 -0.06 -13.53 16 14 C -0.31 -8.70 10.16 -15.14 -0.15 -8.86 16 15 H 0.13 3.97 7.36 -52.49 -0.39 3.58 16 16 C 0.05 1.41 5.51 -17.40 -0.10 1.31 16 17 N -0.85 -23.75 13.94 55.53 0.77 -22.98 16 18 Si 0.88 19.47 27.74 -169.99 -4.72 14.76 16 19 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.26 -5.61 6.53 56.52 0.37 -5.24 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.10 0.77 8.05 -51.93 -0.42 0.36 16 26 H 0.10 0.86 8.03 -51.93 -0.42 0.44 16 27 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.41 6.43 7.86 -40.82 -0.32 6.11 16 30 H 0.38 9.22 5.22 -40.82 -0.21 9.01 16 31 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 LS Contribution 275.75 15.07 4.16 4.16 Total: -1.00 -30.93 275.75 -5.26 -36.19 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -3.85 Total: 12.47 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -1.40 Total: 8.61 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.38 Total: -48.59 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: 0.18 Total: -27.60 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.72 Total: 14.76 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.93 -5.26 -36.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167031817.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.362 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds