Wall clock time and date at job start Mon Mar 30 2020 02:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.05479 * 2 1 4 4 N 1.45480 * 108.91336 * 119.10799 * 2 1 3 5 5 C 1.33661 * 122.88982 * 101.36796 * 4 2 1 6 6 O 1.21281 * 118.64398 * 179.80990 * 5 4 2 7 7 C 1.49910 * 122.71382 * 359.82873 * 5 4 2 8 8 H 1.09003 * 109.11071 * 259.22752 * 7 5 4 9 9 C 1.52998 * 109.06451 * 140.13032 * 7 5 4 10 10 N 1.45663 * 111.29567 * 19.69146 * 7 5 4 11 11 C 1.46500 * 118.57432 * 160.55539 * 10 7 5 12 12 C 1.50693 * 109.47228 * 269.98323 * 11 10 7 13 13 H 1.08000 * 120.00033 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99793 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00248 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99770 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47067 * 59.99638 * 16 14 12 18 18 H 1.48504 * 109.47089 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47449 * 299.99709 * 16 14 12 20 20 C 1.33662 * 122.84748 * 340.53655 * 10 7 5 21 21 O 1.21283 * 118.64012 * 180.02562 * 20 10 7 22 22 H 1.08997 * 109.47650 * 179.09619 * 1 2 3 23 23 H 1.09007 * 109.46787 * 299.09865 * 1 2 3 24 24 H 1.09004 * 109.47398 * 59.09360 * 1 2 3 25 25 H 0.96995 * 118.53296 * 281.11694 * 4 2 1 26 26 H 1.08992 * 109.47189 * 298.23064 * 9 7 5 27 27 H 1.08997 * 109.47175 * 58.23478 * 9 7 5 28 28 H 1.09008 * 109.46628 * 178.23212 * 9 7 5 29 29 H 1.09005 * 109.47055 * 29.98503 * 11 10 7 30 30 H 1.08995 * 109.46769 * 149.97709 * 11 10 7 31 31 H 0.97003 * 120.00400 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8859 1.0303 0.0000 4 7 2.0016 -0.6695 1.2024 5 6 2.4461 -1.9300 1.2044 6 8 2.8247 -2.4113 2.2513 7 6 2.4965 -2.7733 -0.0340 8 1 1.6425 -3.4507 -0.0394 9 6 3.7873 -3.5946 -0.0272 10 7 2.4606 -1.9510 -1.2358 11 6 2.9265 -2.5327 -2.4970 12 6 4.4024 -2.2731 -2.6551 13 1 4.9397 -1.7288 -1.8925 14 6 5.0667 -2.7295 -3.7738 15 7 4.4124 -3.3919 -4.7025 16 14 6.8962 -2.4071 -3.9700 17 1 7.6321 -3.0258 -2.8383 18 1 7.3684 -2.9969 -5.2485 19 1 7.1426 -0.9428 -3.9791 20 6 2.0208 -0.6888 -1.2377 21 8 2.0240 -0.0737 -2.2830 22 1 -0.3634 -1.0275 -0.0162 23 1 -0.3633 0.4998 0.8980 24 1 -0.3634 0.5279 -0.8818 25 1 1.9963 -0.1781 2.0387 26 1 4.6455 -2.9227 -0.0373 27 1 3.8201 -4.2125 0.8702 28 1 3.8158 -4.2338 -0.9097 29 1 2.7453 -3.6076 -2.4902 30 1 2.3866 -2.0786 -3.3278 31 1 4.8798 -3.7133 -5.4894 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205940592.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:34 Heat of formation + Delta-G solvation = -66.475533 kcal Electronic energy + Delta-G solvation = -16367.500979 eV Core-core repulsion = 13649.101650 eV Total energy + Delta-G solvation = -2718.399329 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.79264 -38.51839 -35.85916 -35.35263 -32.67930 -30.33875 -30.10290 -27.78035 -24.61679 -24.10794 -22.09291 -21.21938 -18.07844 -17.57834 -17.17105 -16.63922 -15.52793 -15.10090 -14.54906 -14.20975 -13.89723 -13.74703 -13.26623 -13.09819 -12.32423 -12.12211 -11.98076 -11.86722 -11.55891 -11.28783 -11.06965 -10.91095 -10.52093 -10.20055 -9.88734 -9.59619 -9.33617 -8.97372 -8.47011 -7.91802 -6.09216 -4.13121 2.59888 3.00896 3.30009 3.31215 3.34815 3.39473 3.65619 4.39094 4.42988 4.70186 5.05244 5.10536 5.26214 5.46055 5.50985 5.57047 5.69881 6.03048 6.28567 6.42118 6.69751 6.82459 6.92290 7.18629 7.28012 7.37958 7.85693 8.12440 8.15161 8.23382 8.72578 8.90564 9.51012 10.99217 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.009615 C = 0.008384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.741947 B = 2911.331228 C = 3339.040204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.114 0.886 4 N -0.715 5.715 5 C 0.520 3.480 6 O -0.543 6.543 7 C 0.132 3.868 8 H 0.096 0.904 9 C -0.140 4.140 10 N -0.585 5.585 11 C 0.241 3.759 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.503 3.497 21 O -0.530 6.530 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.401 0.599 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 3.306 9.713 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 H 0.132 0.868 4 N -0.369 5.369 5 C 0.306 3.694 6 O -0.419 6.419 7 C 0.024 3.976 8 H 0.114 0.886 9 C -0.198 4.198 10 N -0.318 5.318 11 C 0.123 3.877 12 C -0.562 4.562 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.287 3.713 21 O -0.406 6.406 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.238 0.762 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.244 3.135 9.307 11.638 hybrid contribution 0.975 0.454 0.152 1.086 sum -5.270 3.590 9.459 11.408 Atomic orbital electron populations 1.22146 0.92872 1.03261 1.03349 1.21131 0.96282 0.98133 0.83138 0.86831 1.45585 1.65622 1.13955 1.11764 1.20391 0.75868 0.81965 0.91128 1.90734 1.47812 1.71074 1.32309 1.20800 1.02132 0.92650 0.82000 0.88646 1.21988 0.94743 1.00051 1.02977 1.47847 1.61159 1.11995 1.10824 1.19423 0.95243 0.93796 0.79249 1.21301 0.93285 1.36078 1.05514 0.92480 1.24896 0.98551 0.95042 0.95420 1.69907 1.36304 1.37326 1.09665 0.86584 0.84972 0.78670 0.77384 1.20158 1.21165 1.20227 1.19600 0.79220 0.82601 0.89848 1.90754 1.55134 1.63088 1.31642 0.91939 0.91279 0.90228 0.76243 0.91305 0.91649 0.89389 0.94480 0.93206 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.44 37.16 0.35 -1.40 16 2 C 0.12 1.69 3.83 -70.01 -0.27 1.43 16 3 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 4 N -0.72 -9.67 5.06 -56.52 -0.29 -9.96 16 5 C 0.52 8.57 7.43 -11.86 -0.09 8.49 16 6 O -0.54 -10.04 16.92 5.56 0.09 -9.95 16 7 C 0.13 2.30 3.54 -69.92 -0.25 2.05 16 8 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 9 C -0.14 -2.53 7.72 37.16 0.29 -2.24 16 10 N -0.59 -12.01 2.72 -170.52 -0.46 -12.47 16 11 C 0.24 5.99 4.36 -5.20 -0.02 5.96 16 12 C -0.52 -14.14 7.80 -34.44 -0.27 -14.41 16 13 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 16 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 C 0.50 9.93 6.80 -11.86 -0.08 9.85 16 21 O -0.53 -12.62 16.32 5.55 0.09 -12.53 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.40 4.40 8.84 -40.82 -0.36 4.03 16 26 H 0.07 1.37 7.39 -51.93 -0.38 0.98 16 27 H 0.06 1.06 7.72 -51.93 -0.40 0.66 16 28 H 0.09 1.70 6.47 -51.92 -0.34 1.36 16 29 H 0.04 0.92 7.12 -51.93 -0.37 0.55 16 30 H 0.05 1.40 7.24 -51.93 -0.38 1.02 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 262.68 15.07 3.96 3.96 Total: -1.00 -31.92 262.68 -5.19 -37.11 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.86 Total: 0.94 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -0.44 Total: 11.38 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.01 Total: -47.35 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.18 Total: -22.47 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.92 -5.19 -37.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205940592.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.366 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds