Wall clock time and date at job start Mon Mar 30 2020 02:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47347 * 2 1 4 4 C 1.50698 * 109.47056 * 120.00313 * 2 1 3 5 5 N 1.29951 * 126.28383 * 299.97055 * 4 2 1 6 6 O 1.21304 * 110.25004 * 180.02562 * 5 4 2 7 7 C 1.33644 * 109.80956 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.54882 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47325 * 270.02524 * 8 7 6 10 10 H 1.08993 * 109.47662 * 305.00065 * 9 8 7 11 11 O 1.42903 * 109.46670 * 65.00638 * 9 8 7 12 12 C 1.50706 * 109.46931 * 184.99730 * 9 8 7 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 9 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 N 1.31132 * 106.89869 * 0.22746 * 7 6 5 21 21 H 1.08993 * 109.47624 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46876 * 300.00443 * 1 2 3 23 23 H 1.09000 * 109.46973 * 59.99716 * 1 2 3 24 24 H 1.09003 * 109.47329 * 239.99839 * 2 1 3 25 25 H 1.09003 * 109.46827 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.46963 * 299.99388 * 3 2 1 27 27 H 1.09000 * 109.46794 * 60.00125 * 3 2 1 28 28 H 1.09006 * 109.47306 * 150.02987 * 8 7 6 29 29 H 1.09000 * 109.47114 * 30.03119 * 8 7 6 30 30 H 0.96695 * 114.00613 * 60.00174 * 11 9 8 31 31 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7953 -0.3744 2.4631 6 8 2.3421 -1.1472 3.2216 7 6 3.0003 -2.0775 2.5235 8 6 3.8080 -3.2181 3.0870 9 6 5.2586 -2.7706 3.2777 10 1 5.6476 -2.3870 2.3346 11 8 5.3134 -1.7426 4.2689 12 6 6.0917 -3.9442 3.7246 13 1 5.6326 -4.9125 3.8587 14 6 7.4401 -3.7816 3.9622 15 7 8.1673 -4.8059 4.3517 16 14 8.2341 -2.1066 3.7309 17 1 8.7179 -1.9769 2.3330 18 1 7.2360 -1.0430 4.0101 19 1 9.3795 -1.9684 4.6660 20 7 2.8135 -1.8050 1.2544 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.7758 -4.0617 2.3974 29 1 3.3910 -3.5185 4.0483 30 1 4.9823 -2.0141 5.1359 31 1 9.1160 -4.6916 4.5185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232755880.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:38 Heat of formation + Delta-G solvation = 1.446753 kcal Electronic energy + Delta-G solvation = -15614.550890 eV Core-core repulsion = 12899.096892 eV Total energy + Delta-G solvation = -2715.453998 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.16245 -36.73004 -36.69322 -34.38036 -32.35961 -32.11556 -29.54338 -27.34912 -26.15192 -24.33442 -22.96568 -21.12257 -19.81940 -17.69998 -17.60736 -16.96068 -15.07101 -14.97141 -14.64963 -14.51352 -14.23776 -13.68955 -13.50647 -12.89621 -12.39767 -12.36610 -11.89437 -11.68285 -11.61129 -11.35755 -11.16618 -11.09992 -10.92364 -10.65901 -10.45788 -10.29608 -9.51453 -9.17335 -8.72771 -8.44042 -6.22370 -4.36044 1.56352 2.58455 3.29623 3.34953 3.44701 3.69849 3.83446 4.32618 4.46272 4.88233 4.93325 5.00096 5.11103 5.41500 5.44133 5.62183 5.64199 5.69361 5.76110 5.78686 5.89218 6.04339 6.12011 6.12867 6.39289 6.40003 7.10926 7.39866 8.16087 8.55852 8.69527 8.88348 9.40534 10.87477 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.046458 B = 0.006652 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.554593 B = 4208.097564 C = 4425.332649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.002 4.002 3 C -0.144 4.144 4 C 0.168 3.832 5 N -0.394 5.394 6 O 0.074 5.926 7 C 0.213 3.787 8 C -0.051 4.051 9 C 0.201 3.799 10 H 0.063 0.937 11 O -0.580 6.580 12 C -0.568 4.568 13 H 0.079 0.921 14 C 0.089 3.911 15 N -0.887 5.887 16 Si 0.868 3.132 17 H -0.286 1.286 18 H -0.218 1.218 19 H -0.293 1.293 20 N -0.497 5.497 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.361 0.639 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.408 8.162 -5.892 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 C -0.202 4.202 4 C -0.106 4.106 5 N -0.104 5.104 6 O 0.017 5.983 7 C -0.007 4.007 8 C -0.090 4.090 9 C 0.142 3.858 10 H 0.081 0.919 11 O -0.387 6.387 12 C -0.605 4.605 13 H 0.097 0.903 14 C -0.117 4.117 15 N -0.523 5.523 16 Si 0.694 3.306 17 H -0.212 1.212 18 H -0.140 1.140 19 H -0.220 1.220 20 N -0.231 5.231 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.117 0.883 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.208 0.792 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.443 9.068 -6.545 16.730 hybrid contribution 0.510 0.111 0.399 0.657 sum -11.933 9.179 -6.146 16.261 Atomic orbital electron populations 1.21827 0.93217 1.02396 1.02641 1.19483 0.96097 0.95299 0.91343 1.21838 1.01669 0.94138 1.02600 1.25720 0.97033 0.93304 0.94508 1.74486 1.18643 1.14545 1.02759 1.85269 1.47909 1.29882 1.35192 1.29279 0.92414 0.93372 0.85598 1.21285 0.95700 0.90034 1.02028 1.19819 0.87839 0.88233 0.89869 0.91926 1.86729 1.86896 1.42167 1.22880 1.21348 0.93850 0.95903 1.49356 0.90333 1.24936 0.97027 0.97185 0.92533 1.69934 1.07324 1.30971 1.44062 0.87062 0.79198 0.86726 0.77619 1.21243 1.14047 1.21978 1.71918 1.17878 1.14788 1.18533 0.92387 0.91956 0.91356 0.88294 0.92216 0.91351 0.91934 0.86923 0.88399 0.79235 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.18 37.16 0.34 -1.13 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.14 -1.61 9.18 37.16 0.34 -1.27 16 4 C 0.17 2.81 6.72 -156.37 -1.05 1.76 16 5 N -0.39 -7.02 12.16 30.90 0.38 -6.64 16 6 O 0.07 1.35 11.31 18.10 0.20 1.55 16 7 C 0.21 3.90 7.54 -13.06 -0.10 3.80 16 8 C -0.05 -0.91 5.46 -27.88 -0.15 -1.07 16 9 C 0.20 4.44 2.30 -27.88 -0.06 4.37 16 10 H 0.06 1.49 7.57 -51.93 -0.39 1.09 16 11 O -0.58 -12.57 9.89 -35.23 -0.35 -12.92 16 12 C -0.57 -14.77 9.34 -34.44 -0.32 -15.09 16 13 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 14 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 15 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 16 Si 0.87 21.32 26.99 -169.99 -4.59 16.74 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.22 -5.29 5.30 56.52 0.30 -4.99 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 N -0.50 -9.28 11.55 -9.86 -0.11 -9.39 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 29 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.36 6.64 9.04 45.56 0.41 7.05 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 270.13 15.07 4.07 4.07 Total: -1.00 -30.87 270.13 -4.48 -35.35 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.44 Total: 3.14 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.41 Total: -6.60 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 1.04 Total: -41.33 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.14 Total: -11.37 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.59 Total: 16.74 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.87 -4.48 -35.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232755880.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.796 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds