Wall clock time and date at job start Mon Mar 30 2020 02:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47347 * 2 1 4 4 C 1.50698 * 109.47056 * 120.00313 * 2 1 3 5 5 N 1.29951 * 126.28383 * 299.97055 * 4 2 1 6 6 O 1.21304 * 110.25004 * 180.02562 * 5 4 2 7 7 C 1.33644 * 109.80956 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.54882 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47325 * 270.02524 * 8 7 6 10 10 H 1.08993 * 109.47662 * 305.00065 * 9 8 7 11 11 O 1.42903 * 109.46670 * 65.00638 * 9 8 7 12 12 C 1.50706 * 109.46931 * 184.99730 * 9 8 7 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 9 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 N 1.31132 * 106.89869 * 0.22746 * 7 6 5 21 21 H 1.08993 * 109.47624 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46876 * 300.00443 * 1 2 3 23 23 H 1.09000 * 109.46973 * 59.99716 * 1 2 3 24 24 H 1.09003 * 109.47329 * 239.99839 * 2 1 3 25 25 H 1.09003 * 109.46827 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.46963 * 299.99388 * 3 2 1 27 27 H 1.09000 * 109.46794 * 60.00125 * 3 2 1 28 28 H 1.09006 * 109.47306 * 150.02987 * 8 7 6 29 29 H 1.09000 * 109.47114 * 30.03119 * 8 7 6 30 30 H 0.96695 * 114.00613 * 60.00174 * 11 9 8 31 31 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7953 -0.3744 2.4631 6 8 2.3421 -1.1472 3.2216 7 6 3.0003 -2.0775 2.5235 8 6 3.8080 -3.2181 3.0870 9 6 5.2586 -2.7706 3.2777 10 1 5.6476 -2.3870 2.3346 11 8 5.3134 -1.7426 4.2689 12 6 6.0917 -3.9442 3.7246 13 1 5.6326 -4.9125 3.8587 14 6 7.4401 -3.7816 3.9622 15 7 8.1673 -4.8059 4.3517 16 14 8.2341 -2.1066 3.7309 17 1 8.7179 -1.9769 2.3330 18 1 7.2360 -1.0430 4.0101 19 1 9.3795 -1.9684 4.6660 20 7 2.8135 -1.8050 1.2544 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.7758 -4.0617 2.3974 29 1 3.3910 -3.5185 4.0483 30 1 4.9823 -2.0141 5.1359 31 1 9.1160 -4.6916 4.5185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232755880.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:38 Heat of formation + Delta-G solvation = -22.323355 kcal Electronic energy + Delta-G solvation = -15615.581639 eV Core-core repulsion = 12899.096892 eV Total energy + Delta-G solvation = -2716.484747 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.53031 -38.46315 -37.83541 -35.67930 -34.44138 -33.48421 -31.14172 -28.17350 -28.00114 -25.54270 -24.41881 -22.80255 -21.07635 -19.49004 -19.03152 -18.39839 -16.93615 -16.42804 -16.14585 -15.91389 -15.70179 -14.98294 -14.83795 -14.42283 -13.82820 -13.68091 -13.20900 -13.06626 -12.92136 -12.67252 -12.58035 -12.49482 -12.25939 -12.20510 -11.95660 -11.83336 -11.19437 -10.94608 -10.79706 -10.22883 -8.35801 -6.50472 0.16647 1.24261 1.38671 1.45377 1.73210 1.88658 2.42218 2.64266 3.01970 3.08581 3.78635 3.98876 4.02747 4.03962 4.23144 4.25793 4.41193 4.68336 4.71944 4.78685 4.82587 4.94420 4.97359 5.04437 5.21216 5.27623 5.35132 5.42087 6.07260 6.62815 7.16817 7.18762 7.32410 8.77392 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.046458 B = 0.006652 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.554593 B = 4208.097564 C = 4425.332649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.008 4.008 3 C -0.140 4.140 4 C 0.168 3.832 5 N -0.406 5.406 6 O 0.067 5.933 7 C 0.210 3.790 8 C -0.040 4.040 9 C 0.209 3.791 10 H 0.048 0.952 11 O -0.587 6.587 12 C -0.560 4.560 13 H 0.057 0.943 14 C 0.038 3.962 15 N -0.932 5.932 16 Si 0.926 3.074 17 H -0.290 1.290 18 H -0.211 1.211 19 H -0.295 1.295 20 N -0.516 5.516 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.044 0.956 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.377 0.623 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.684 9.611 -6.763 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.105 4.105 5 N -0.117 5.117 6 O 0.013 5.987 7 C -0.010 4.010 8 C -0.079 4.079 9 C 0.150 3.850 10 H 0.065 0.935 11 O -0.395 6.395 12 C -0.597 4.597 13 H 0.076 0.924 14 C -0.163 4.163 15 N -0.570 5.570 16 Si 0.751 3.249 17 H -0.217 1.217 18 H -0.133 1.133 19 H -0.222 1.222 20 N -0.250 5.250 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.126 0.874 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.226 0.774 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.737 10.518 -7.394 18.815 hybrid contribution 0.835 -0.357 0.648 1.116 sum -12.902 10.161 -6.746 17.755 Atomic orbital electron populations 1.21804 0.91352 1.02463 1.03796 1.19817 0.97596 0.95667 0.89705 1.21830 1.00713 0.93390 1.03836 1.26528 0.95841 0.92613 0.95512 1.74481 1.19267 1.14747 1.03218 1.85252 1.48113 1.29949 1.35424 1.29207 0.92647 0.93386 0.85736 1.21068 0.93223 0.89969 1.03655 1.19521 0.89756 0.86602 0.89110 0.93457 1.86653 1.87284 1.41697 1.23851 1.21652 0.94011 0.96461 1.47606 0.92433 1.25661 0.97970 0.99829 0.92805 1.70039 1.07712 1.32843 1.46433 0.86179 0.78300 0.83443 0.77009 1.21659 1.13265 1.22181 1.71941 1.18531 1.15751 1.18782 0.92873 0.92737 0.88251 0.87428 0.93659 0.88065 0.92756 0.86311 0.85972 0.77403 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.18 71.98 0.66 -1.78 16 2 C -0.01 -0.18 3.39 -11.54 -0.04 -0.22 16 3 C -0.14 -2.78 9.18 71.98 0.66 -2.12 16 4 C 0.17 5.39 6.72 138.46 0.93 6.32 16 5 N -0.41 -13.87 12.16 -60.30 -0.73 -14.61 16 6 O 0.07 2.34 11.31 74.82 0.85 3.18 16 7 C 0.21 7.38 7.54 88.38 0.67 8.04 16 8 C -0.04 -1.37 5.46 29.85 0.16 -1.21 16 9 C 0.21 8.96 2.30 29.85 0.07 9.03 16 10 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 11 O -0.59 -24.27 9.89 -148.98 -1.47 -25.74 16 12 C -0.56 -28.93 9.34 25.60 0.24 -28.70 16 13 H 0.06 3.17 7.99 -2.91 -0.02 3.15 16 14 C 0.04 2.11 5.47 84.66 0.46 2.58 16 15 N -0.93 -55.38 13.96 21.45 0.30 -55.08 16 16 Si 0.93 44.00 26.99 68.60 1.85 45.86 16 17 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 18 H -0.21 -9.67 5.30 99.48 0.53 -9.14 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 20 N -0.52 -18.52 11.55 -303.17 -3.50 -22.02 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.12 3.94 8.14 -2.38 -0.02 3.92 16 29 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 30 H 0.38 13.04 9.04 -74.06 -0.67 12.37 16 31 H 0.27 15.08 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -65.09 270.13 1.39 -63.70 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.29 Total: 12.76 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 3.81 Total: -8.05 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -3.94 Total: -91.72 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.63 Total: -22.56 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.85 Total: 45.86 kcal Total: -65.09 1.39 -63.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232755880.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.382 kcal (2) G-P(sol) polarization free energy of solvation -65.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds