Wall clock time and date at job start Mon Mar 30 2020 03:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21284 * 119.99408 * 2 1 4 4 N 1.34771 * 120.00114 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99694 * 184.78467 * 4 2 1 6 6 C 1.50697 * 109.33207 * 54.10502 * 5 4 2 7 7 H 1.07999 * 120.00134 * 236.12829 * 6 5 4 8 8 C 1.37877 * 120.00207 * 56.11796 * 6 5 4 9 9 N 1.31525 * 119.99891 * 354.14936 * 8 6 5 10 10 Si 1.86800 * 120.00293 * 174.14712 * 8 6 5 11 11 H 1.48499 * 109.46928 * 90.00142 * 10 8 6 12 12 H 1.48500 * 109.47444 * 210.00069 * 10 8 6 13 13 H 1.48493 * 109.47090 * 330.00630 * 10 8 6 14 14 C 1.52907 * 109.20024 * 173.89709 * 5 4 2 15 15 C 1.53350 * 108.56163 * 71.52128 * 14 5 4 16 16 C 1.52918 * 108.67562 * 67.37330 * 15 14 5 17 17 N 1.45752 * 110.48505 * 309.24741 * 16 15 14 18 18 C 1.33350 * 124.11070 * 19.05553 * 17 16 15 19 19 O 1.21280 * 118.24657 * 177.79502 * 18 17 16 20 20 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47132 * 299.99676 * 1 2 3 22 22 H 1.08997 * 109.47867 * 59.99574 * 1 2 3 23 23 H 0.97002 * 120.00178 * 4.79057 * 4 2 1 24 24 H 0.96994 * 119.99915 * 185.01968 * 9 8 6 25 25 H 1.09001 * 109.73848 * 311.67039 * 14 5 4 26 26 H 1.08999 * 109.51218 * 191.23962 * 14 5 4 27 27 H 1.09004 * 109.60290 * 307.61736 * 15 14 5 28 28 H 1.09003 * 109.73814 * 187.21745 * 15 14 5 29 29 H 1.08998 * 109.30121 * 188.93552 * 16 15 14 30 30 H 1.08997 * 109.29803 * 69.56167 * 16 15 14 31 31 H 0.97010 * 117.94466 * 199.07119 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6421 -1.1693 0.1053 6 6 4.0551 -0.3856 1.3244 7 1 4.7359 0.4470 1.2260 8 6 3.5638 -0.7314 2.5654 9 7 2.6477 -1.6691 2.6720 10 14 4.1992 0.1318 4.0953 11 1 3.3630 1.3273 4.3723 12 1 4.1328 -0.7974 5.2517 13 1 5.6068 0.5520 3.8780 14 6 4.1348 -2.6110 0.2341 15 6 3.9565 -3.3106 -1.1189 16 6 4.9159 -2.6777 -2.1275 17 7 4.7818 -1.2264 -2.1178 18 6 4.2320 -0.5329 -1.1204 19 8 4.2117 0.6768 -1.2053 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8901 22 1 -0.3635 0.5139 -0.8899 23 1 1.6985 -2.0057 -0.0711 24 1 2.2494 -1.8620 3.5351 25 1 3.5544 -3.1318 0.9957 26 1 5.1889 -2.6121 0.5116 27 1 2.9297 -3.1855 -1.4627 28 1 4.1811 -4.3723 -1.0168 29 1 4.6893 -3.0538 -3.1252 30 1 5.9399 -2.9468 -1.8684 31 1 5.1132 -0.7341 -2.8852 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238134280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:34 Heat of formation + Delta-G solvation = -95.183322 kcal Electronic energy + Delta-G solvation = -16918.737551 eV Core-core repulsion = 14199.093359 eV Total energy + Delta-G solvation = -2719.644192 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.41609 -39.30518 -37.27914 -35.87307 -33.80587 -32.46214 -30.81475 -29.00880 -27.07371 -24.28484 -23.18765 -21.33662 -19.72896 -18.57891 -17.87574 -17.39937 -17.14325 -16.35017 -15.86886 -15.58929 -15.49499 -14.70614 -14.39692 -14.12388 -13.98627 -13.50750 -13.11166 -13.01232 -12.81173 -12.69023 -12.61949 -12.07948 -11.89416 -11.77550 -11.17559 -10.70505 -10.46687 -10.14699 -9.78197 -9.28110 -8.09629 -6.17389 1.33220 1.37314 1.46041 1.93971 2.26843 2.40392 2.66405 3.06612 3.33516 4.12521 4.19516 4.26051 4.39880 4.46068 4.63394 4.76931 4.79331 4.93127 5.00541 5.13351 5.25703 5.46241 5.62752 5.78359 6.12363 6.19979 6.23851 6.63498 6.77472 7.25852 7.45926 7.66764 8.06781 8.89880 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.014162 C = 0.011880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.223871 B = 1976.580473 C = 2356.407491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.483 3.517 3 O -0.578 6.578 4 N -0.676 5.676 5 C 0.286 3.714 6 C -0.510 4.510 7 H 0.017 0.983 8 C 0.047 3.953 9 N -0.879 5.879 10 Si 0.935 3.065 11 H -0.294 1.294 12 H -0.264 1.264 13 H -0.281 1.281 14 C -0.107 4.107 15 C -0.133 4.133 16 C 0.110 3.890 17 N -0.726 5.726 18 C 0.499 3.501 19 O -0.581 6.581 20 H 0.096 0.904 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.394 0.606 24 H 0.263 0.737 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -10.028 -7.372 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.269 3.731 3 O -0.457 6.457 4 N -0.327 5.327 5 C 0.199 3.801 6 C -0.550 4.550 7 H 0.035 0.965 8 C -0.156 4.156 9 N -0.516 5.516 10 Si 0.762 3.238 11 H -0.221 1.221 12 H -0.189 1.189 13 H -0.207 1.207 14 C -0.146 4.146 15 C -0.170 4.170 16 C -0.013 4.013 17 N -0.379 5.379 18 C 0.285 3.715 19 O -0.458 6.458 20 H 0.115 0.885 21 H 0.098 0.902 22 H 0.112 0.888 23 H 0.229 0.771 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.400 -8.963 -7.054 11.492 hybrid contribution 0.305 0.852 0.805 1.211 sum -1.095 -8.111 -6.248 10.297 Atomic orbital electron populations 1.21749 0.90343 1.05046 1.04171 1.21324 0.91432 0.84205 0.76115 1.90736 1.71623 1.33011 1.50354 1.46012 1.06561 1.07498 1.72660 1.17827 0.79590 0.94501 0.88206 1.20950 1.28375 1.13920 0.91725 0.96470 1.25206 0.95206 0.95294 0.99903 1.69902 1.25861 1.30682 1.25176 0.85933 0.78498 0.78549 0.80805 1.22130 1.18870 1.20673 1.21736 1.00821 0.93928 0.98115 1.21978 0.99824 1.01250 0.93959 1.21605 1.00298 0.77881 1.01503 1.45691 1.62097 1.09430 1.20669 1.21548 0.77279 0.87419 0.85214 1.90658 1.57978 1.17173 1.79977 0.88473 0.90158 0.88806 0.77082 0.92734 0.90006 0.92887 0.91386 0.87187 0.87738 0.90971 0.77454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 10.39 71.24 0.74 -4.52 16 2 C 0.48 23.37 7.34 87.66 0.64 24.01 16 3 O -0.58 -35.13 13.71 18.60 0.25 -34.88 16 4 N -0.68 -30.12 3.73 -430.66 -1.61 -31.73 16 5 C 0.29 13.85 0.36 1.92 0.00 13.85 16 6 C -0.51 -29.83 6.18 25.60 0.16 -29.67 16 7 H 0.02 1.14 7.44 -2.91 -0.02 1.11 16 8 C 0.05 2.56 5.21 84.65 0.44 3.00 16 9 N -0.88 -45.29 11.14 21.45 0.24 -45.05 16 10 Si 0.93 45.84 29.55 68.60 2.03 47.86 16 11 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 12 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 14 C -0.11 -4.16 4.43 30.68 0.14 -4.02 16 15 C -0.13 -3.47 5.98 30.68 0.18 -3.29 16 16 C 0.11 2.67 7.17 86.49 0.62 3.29 16 17 N -0.73 -25.54 5.45 -467.33 -2.55 -28.08 16 18 C 0.50 24.31 6.55 87.71 0.57 24.88 16 19 O -0.58 -34.70 14.65 18.61 0.27 -34.43 16 20 H 0.10 2.63 7.92 -2.39 -0.02 2.61 16 21 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 22 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 23 H 0.39 14.74 7.71 -92.71 -0.71 14.02 16 24 H 0.26 13.05 8.32 -92.71 -0.77 12.28 16 25 H 0.08 3.38 6.93 -2.39 -0.02 3.36 16 26 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16 27 H 0.07 1.74 7.31 -2.39 -0.02 1.73 16 28 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.39 12.47 8.80 -92.70 -0.82 11.65 16 Total: -1.00 -79.59 256.39 1.77 -77.83 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -0.37 Total: 20.94 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: 3.50 Total: 27.53 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -3.91 Total: -104.86 kcal Atomic # 8 Polarization: -69.84 SS G_CDS: 0.53 Total: -69.31 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -79.59 1.77 -77.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238134280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.357 kcal (2) G-P(sol) polarization free energy of solvation -79.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds