Wall clock time and date at job start Mon Mar 30 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.35318 * 126.91104 * 2 1 4 4 H 0.96993 * 125.86980 * 359.97438 * 3 2 1 5 5 N 1.28718 * 108.25960 * 179.97438 * 3 2 1 6 6 N 1.28625 * 110.18368 * 0.02562 * 5 3 2 7 7 C 1.33771 * 108.88474 * 359.76250 * 6 5 3 8 8 C 1.50700 * 126.75425 * 180.23473 * 7 6 5 9 9 H 1.09002 * 109.47482 * 195.16122 * 8 7 6 10 10 O 1.42901 * 109.47135 * 315.16219 * 8 7 6 11 11 C 1.53001 * 109.47117 * 75.16014 * 8 7 6 12 12 N 1.46501 * 109.47223 * 180.02562 * 11 8 7 13 13 C 1.46497 * 119.99917 * 270.00060 * 12 11 8 14 14 C 1.36933 * 119.99950 * 89.99947 * 12 11 8 15 15 H 1.07994 * 120.00110 * 22.33092 * 14 12 11 16 16 C 1.38816 * 119.99729 * 202.32606 * 14 12 11 17 17 N 1.31615 * 120.00275 * 11.36971 * 16 14 12 18 18 Si 1.86803 * 119.99792 * 191.37030 * 16 14 12 19 19 H 1.48495 * 109.47238 * 59.99918 * 18 16 14 20 20 H 1.48500 * 109.46985 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46846 * 300.00045 * 18 16 14 22 22 H 1.09004 * 109.47325 * 90.02706 * 1 2 3 23 23 H 1.09001 * 109.47324 * 330.02205 * 1 2 3 24 24 H 1.08998 * 109.47042 * 210.01986 * 1 2 3 25 25 H 0.96694 * 114.00093 * 59.99822 * 10 8 7 26 26 H 1.08994 * 109.47345 * 300.00234 * 11 8 7 27 27 H 1.09000 * 109.46915 * 60.00282 * 11 8 7 28 28 H 1.09006 * 109.47313 * 94.21077 * 13 12 11 29 29 H 1.09004 * 109.47607 * 214.21271 * 13 12 11 30 30 H 1.09001 * 109.47619 * 334.21424 * 13 12 11 31 31 H 0.96996 * 120.00451 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3196 1.0820 0.0000 4 1 2.0325 2.0084 -0.0004 5 7 3.5392 0.6703 0.0005 6 7 3.5736 -0.6155 0.0004 7 6 2.3199 -1.0821 0.0049 8 6 1.8960 -2.5283 0.0113 9 1 0.8414 -2.5990 -0.2548 10 8 2.6768 -3.2577 -0.9376 11 6 2.1102 -3.1163 1.4075 12 7 1.6987 -4.5223 1.4136 13 6 0.3166 -4.8796 1.7427 14 6 2.6060 -5.5026 1.1117 15 1 3.6633 -5.3122 1.2218 16 6 2.1665 -6.7410 0.6643 17 7 0.9080 -6.9065 0.3165 18 14 3.3616 -8.1727 0.5557 19 1 3.9194 -8.4551 1.9026 20 1 2.6495 -9.3746 0.0522 21 1 4.4659 -7.8261 -0.3748 22 1 -0.3634 -0.0005 -1.0277 23 1 -0.3634 0.8902 0.5135 24 1 -0.3633 -0.8898 0.5141 25 1 3.6275 -3.2383 -0.7626 26 1 3.1648 -3.0456 1.6737 27 1 1.5147 -2.5600 2.1313 28 1 -0.2635 -4.9712 0.8244 29 1 0.3042 -5.8299 2.2766 30 1 -0.1194 -4.1036 2.3719 31 1 0.6008 -7.7719 0.0042 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259732307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:04 Heat of formation + Delta-G solvation = 66.996567 kcal Electronic energy + Delta-G solvation = -15924.974193 eV Core-core repulsion = 13244.655400 eV Total energy + Delta-G solvation = -2680.318793 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.117 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.16471 -37.08854 -34.61597 -33.50032 -32.62825 -31.08949 -28.37619 -26.89334 -25.78713 -23.82099 -22.57546 -20.94481 -20.25034 -17.92664 -16.76039 -16.11429 -15.65290 -14.71623 -14.50712 -14.09581 -13.75144 -13.25605 -13.16644 -12.86745 -12.62153 -11.89325 -11.65867 -11.16664 -10.91733 -10.76211 -10.66051 -10.55026 -10.24278 -10.17975 -9.93983 -9.80655 -9.36434 -8.81162 -8.40126 -6.64855 -5.60252 -3.03819 1.64106 2.68952 2.79577 3.49269 3.53287 3.54622 4.50843 4.60880 4.77421 4.89485 5.25088 5.37446 5.43497 5.57520 5.64798 5.81084 5.84138 6.00625 6.17796 6.31248 6.56929 6.76756 6.87581 6.92097 7.43443 7.78155 7.91960 8.46955 8.53518 8.64186 9.34856 9.96531 10.44645 11.46032 Molecular weight = 226.12amu Principal moments of inertia in cm(-1) A = 0.044587 B = 0.007319 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.837089 B = 3824.642949 C = 4171.643236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.017 4.017 3 N -0.397 5.397 4 H 0.442 0.558 5 N -0.092 5.092 6 N -0.255 5.255 7 C -0.034 4.034 8 C 0.170 3.830 9 H 0.101 0.899 10 O -0.529 6.529 11 C 0.129 3.871 12 N -0.590 5.590 13 C 0.162 3.838 14 C -0.242 4.242 15 H 0.067 0.933 16 C 0.003 3.997 17 N -0.910 5.910 18 Si 0.904 3.096 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.283 1.283 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.371 0.629 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.046 0.954 30 H -0.005 1.005 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 14.699 0.541 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.151 4.151 3 N -0.118 5.118 4 H 0.287 0.713 5 N -0.071 5.071 6 N -0.123 5.123 7 C -0.173 4.173 8 C 0.104 3.896 9 H 0.119 0.881 10 O -0.332 6.332 11 C 0.000 4.000 12 N -0.311 5.311 13 C 0.018 3.982 14 C -0.372 4.372 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.209 1.209 22 H 0.099 0.901 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.217 0.783 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.013 0.987 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.931 14.648 0.239 14.777 hybrid contribution -0.184 -0.153 0.001 0.240 sum -2.115 14.495 0.240 14.650 Atomic orbital electron populations 1.20349 0.85839 1.04247 1.03646 1.22062 0.96340 0.86850 1.09800 1.44987 1.05601 1.10280 1.50962 0.71308 1.78219 1.00925 1.07604 1.20374 1.74979 1.21279 1.00333 1.15737 1.23381 0.89159 0.99334 1.05471 1.21268 0.95297 0.79093 0.93927 0.88106 1.86608 1.21759 1.73740 1.51044 1.21499 0.99153 0.86648 0.92700 1.43919 1.08660 0.99444 1.79120 1.20840 0.84227 0.96095 0.97070 1.19082 0.88774 0.91575 1.37721 0.91491 1.24975 0.96325 0.98997 0.99148 1.70037 1.14531 1.23020 1.47941 0.86343 0.80380 0.82121 0.77708 1.21304 1.21806 1.20922 0.90058 0.91115 0.88828 0.78286 0.92997 0.93911 0.95255 0.93476 0.98682 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.06 36.00 0.36 -0.38 16 2 C -0.02 -0.22 7.31 -82.09 -0.60 -0.82 16 3 N -0.40 -4.61 6.98 33.54 0.23 -4.38 16 4 H 0.44 3.01 8.96 -190.40 -1.71 1.31 16 5 N -0.09 -1.43 13.38 60.35 0.81 -0.62 16 6 N -0.25 -4.60 12.37 33.29 0.41 -4.18 16 7 C -0.03 -0.58 6.10 -82.78 -0.51 -1.09 16 8 C 0.17 3.28 3.60 -27.88 -0.10 3.18 16 9 H 0.10 1.95 7.31 -51.93 -0.38 1.57 16 10 O -0.53 -11.79 12.60 -35.23 -0.44 -12.23 16 11 C 0.13 2.68 5.41 -4.04 -0.02 2.66 16 12 N -0.59 -14.87 2.87 -181.12 -0.52 -15.39 16 13 C 0.16 3.96 9.01 59.85 0.54 4.50 16 14 C -0.24 -6.71 9.02 -15.06 -0.14 -6.85 16 15 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 16 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 17 N -0.91 -26.90 10.58 55.49 0.59 -26.31 16 18 Si 0.90 22.44 29.57 -169.99 -5.03 17.41 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.91 7.57 -51.93 -0.39 0.52 16 25 H 0.37 7.61 9.00 45.56 0.41 8.02 16 26 H 0.05 1.11 8.03 -51.93 -0.42 0.69 16 27 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 28 H 0.03 0.77 7.42 -51.93 -0.39 0.38 16 29 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 30 H -0.01 -0.11 7.85 -51.93 -0.41 -0.52 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 268.93 15.07 4.05 4.05 Total: -1.00 -33.80 268.93 -4.90 -38.70 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.45 Total: 1.74 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.55 Total: 1.22 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 1.52 Total: -50.88 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.44 Total: -12.23 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.80 -4.90 -38.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.699 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds