Wall clock time and date at job start Mon Mar 30 2020 03:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.35318 * 126.91104 * 2 1 4 4 H 0.96993 * 125.86980 * 359.97438 * 3 2 1 5 5 N 1.28718 * 108.25960 * 179.97438 * 3 2 1 6 6 N 1.28625 * 110.18368 * 0.02562 * 5 3 2 7 7 C 1.33771 * 108.88474 * 359.76250 * 6 5 3 8 8 C 1.50700 * 126.75425 * 180.23473 * 7 6 5 9 9 H 1.09002 * 109.47482 * 195.16122 * 8 7 6 10 10 O 1.42901 * 109.47135 * 315.16219 * 8 7 6 11 11 C 1.53001 * 109.47117 * 75.16014 * 8 7 6 12 12 N 1.46501 * 109.47223 * 180.02562 * 11 8 7 13 13 C 1.46497 * 119.99917 * 270.00060 * 12 11 8 14 14 C 1.36933 * 119.99950 * 89.99947 * 12 11 8 15 15 H 1.07994 * 120.00110 * 22.33092 * 14 12 11 16 16 C 1.38816 * 119.99729 * 202.32606 * 14 12 11 17 17 N 1.31615 * 120.00275 * 11.36971 * 16 14 12 18 18 Si 1.86803 * 119.99792 * 191.37030 * 16 14 12 19 19 H 1.48495 * 109.47238 * 59.99918 * 18 16 14 20 20 H 1.48500 * 109.46985 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46846 * 300.00045 * 18 16 14 22 22 H 1.09004 * 109.47325 * 90.02706 * 1 2 3 23 23 H 1.09001 * 109.47324 * 330.02205 * 1 2 3 24 24 H 1.08998 * 109.47042 * 210.01986 * 1 2 3 25 25 H 0.96694 * 114.00093 * 59.99822 * 10 8 7 26 26 H 1.08994 * 109.47345 * 300.00234 * 11 8 7 27 27 H 1.09000 * 109.46915 * 60.00282 * 11 8 7 28 28 H 1.09006 * 109.47313 * 94.21077 * 13 12 11 29 29 H 1.09004 * 109.47607 * 214.21271 * 13 12 11 30 30 H 1.09001 * 109.47619 * 334.21424 * 13 12 11 31 31 H 0.96996 * 120.00451 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3196 1.0820 0.0000 4 1 2.0325 2.0084 -0.0004 5 7 3.5392 0.6703 0.0005 6 7 3.5736 -0.6155 0.0004 7 6 2.3199 -1.0821 0.0049 8 6 1.8960 -2.5283 0.0113 9 1 0.8414 -2.5990 -0.2548 10 8 2.6768 -3.2577 -0.9376 11 6 2.1102 -3.1163 1.4075 12 7 1.6987 -4.5223 1.4136 13 6 0.3166 -4.8796 1.7427 14 6 2.6060 -5.5026 1.1117 15 1 3.6633 -5.3122 1.2218 16 6 2.1665 -6.7410 0.6643 17 7 0.9080 -6.9065 0.3165 18 14 3.3616 -8.1727 0.5557 19 1 3.9194 -8.4551 1.9026 20 1 2.6495 -9.3746 0.0522 21 1 4.4659 -7.8261 -0.3748 22 1 -0.3634 -0.0005 -1.0277 23 1 -0.3634 0.8902 0.5135 24 1 -0.3633 -0.8898 0.5141 25 1 3.6275 -3.2383 -0.7626 26 1 3.1648 -3.0456 1.6737 27 1 1.5147 -2.5600 2.1313 28 1 -0.2635 -4.9712 0.8244 29 1 0.3042 -5.8299 2.2766 30 1 -0.1194 -4.1036 2.3719 31 1 0.6008 -7.7719 0.0042 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259732307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:03 Heat of formation + Delta-G solvation = 39.498154 kcal Electronic energy + Delta-G solvation = -15926.166614 eV Core-core repulsion = 13244.655400 eV Total energy + Delta-G solvation = -2681.511214 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.117 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.30952 -38.76494 -36.50348 -34.58592 -33.90099 -33.05485 -29.84285 -28.09795 -27.81096 -25.45008 -23.78173 -22.57471 -21.71823 -19.11216 -18.74867 -17.47038 -17.08194 -16.48987 -16.18028 -15.65352 -15.24592 -14.93835 -14.50466 -13.88890 -13.87969 -13.56339 -13.06488 -12.83730 -12.74678 -12.50618 -12.34195 -12.09365 -11.97818 -11.89854 -11.77396 -11.39936 -11.03875 -10.53617 -9.96633 -8.67771 -7.73404 -5.18309 0.57582 1.41972 1.50637 1.52852 1.58276 1.88984 2.58211 3.31132 3.43515 3.67359 3.77372 3.90454 4.05315 4.15024 4.49927 4.54516 4.74076 4.84302 4.90943 4.93601 4.98730 5.18531 5.28448 5.41155 5.70327 5.81463 6.07571 6.41182 6.92134 7.25458 7.44030 7.94807 8.36958 9.30865 Molecular weight = 226.12amu Principal moments of inertia in cm(-1) A = 0.044587 B = 0.007319 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.837089 B = 3824.642949 C = 4171.643236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.013 3.987 3 N -0.372 5.372 4 H 0.465 0.535 5 N -0.109 5.109 6 N -0.289 5.289 7 C -0.067 4.067 8 C 0.181 3.819 9 H 0.101 0.899 10 O -0.556 6.556 11 C 0.132 3.868 12 N -0.607 5.607 13 C 0.175 3.825 14 C -0.244 4.244 15 H 0.065 0.935 16 C -0.052 4.052 17 N -0.938 5.938 18 Si 0.963 3.037 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.280 1.280 22 H 0.095 0.905 23 H 0.108 0.892 24 H 0.089 0.911 25 H 0.373 0.627 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.005 0.995 29 H 0.018 0.982 30 H 0.035 0.965 31 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 16.683 0.880 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 N -0.096 5.096 4 H 0.315 0.685 5 N -0.088 5.088 6 N -0.157 5.157 7 C -0.207 4.207 8 C 0.117 3.883 9 H 0.119 0.881 10 O -0.359 6.359 11 C 0.004 3.996 12 N -0.329 5.329 13 C 0.030 3.970 14 C -0.375 4.375 15 H 0.083 0.917 16 C -0.246 4.246 17 N -0.586 5.586 18 Si 0.792 3.208 19 H -0.206 1.206 20 H -0.222 1.222 21 H -0.206 1.206 22 H 0.114 0.886 23 H 0.127 0.873 24 H 0.107 0.893 25 H 0.220 0.780 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.024 0.976 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.504 16.711 0.589 16.908 hybrid contribution -0.032 -0.593 -0.078 0.599 sum -2.535 16.118 0.512 16.324 Atomic orbital electron populations 1.20576 0.82655 1.05940 1.05075 1.22474 0.97853 0.85792 1.06123 1.44964 1.04394 1.11381 1.48886 0.68500 1.78136 1.02585 1.06727 1.21378 1.74925 1.22364 1.01485 1.16940 1.22938 0.89920 0.98887 1.08927 1.20919 0.94899 0.80574 0.91937 0.88111 1.86559 1.22238 1.74830 1.52306 1.21549 0.98891 0.84763 0.94363 1.44093 1.08490 1.00923 1.79433 1.20612 0.84005 0.96121 0.96239 1.19338 0.89245 0.92450 1.36458 0.91694 1.25657 0.97819 1.01297 0.99829 1.70201 1.15952 1.22983 1.49437 0.85413 0.78478 0.79178 0.77771 1.20582 1.22189 1.20648 0.88623 0.87308 0.89273 0.77986 0.93972 0.91350 0.97630 0.96332 0.94619 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.06 71.23 0.72 -0.45 16 2 C 0.01 0.29 7.31 41.35 0.30 0.59 16 3 N -0.37 -7.45 6.98 -47.79 -0.33 -7.78 16 4 H 0.47 4.47 8.96 -219.96 -1.97 2.50 16 5 N -0.11 -3.20 13.38 37.02 0.50 -2.71 16 6 N -0.29 -10.18 12.37 -48.60 -0.60 -10.78 16 7 C -0.07 -2.17 6.10 41.60 0.25 -1.91 16 8 C 0.18 6.88 3.60 29.85 0.11 6.99 16 9 H 0.10 3.79 7.31 -2.39 -0.02 3.77 16 10 O -0.56 -25.05 12.60 -148.98 -1.88 -26.93 16 11 C 0.13 5.37 5.41 86.38 0.47 5.83 16 12 N -0.61 -30.50 2.87 -726.94 -2.09 -32.58 16 13 C 0.17 8.51 9.01 127.77 1.15 9.66 16 14 C -0.24 -13.67 9.02 84.04 0.76 -12.91 16 15 H 0.07 3.58 7.84 -2.91 -0.02 3.55 16 16 C -0.05 -2.96 5.13 84.86 0.44 -2.53 16 17 N -0.94 -56.51 10.58 21.65 0.23 -56.29 16 18 Si 0.96 46.71 29.57 68.60 2.03 48.74 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 22 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 23 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.09 1.41 7.57 -2.39 -0.02 1.39 16 25 H 0.37 15.77 9.00 -74.06 -0.67 15.10 16 26 H 0.04 1.79 8.03 -2.39 -0.02 1.77 16 27 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16 28 H 0.01 0.29 7.42 -2.38 -0.02 0.27 16 29 H 0.02 0.97 7.19 -2.39 -0.02 0.95 16 30 H 0.04 1.41 7.85 -2.39 -0.02 1.39 16 31 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -73.74 268.93 0.57 -73.18 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -1.48 Total: 9.87 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 4.19 Total: 5.27 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -2.30 Total: -110.13 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.88 Total: -26.93 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -73.74 0.57 -73.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.675 kcal (2) G-P(sol) polarization free energy of solvation -73.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds