Wall clock time and date at job start Mon Mar 30 2020 02:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29436 * 119.60073 * 2 1 4 4 N 1.40222 * 120.31327 * 179.90297 * 3 2 1 5 5 C 1.36836 * 120.49061 * 163.60047 * 4 3 2 6 6 H 1.08003 * 120.00217 * 186.64803 * 5 4 3 7 7 C 1.38824 * 120.00181 * 6.65364 * 5 4 3 8 8 N 1.31465 * 119.99911 * 353.80001 * 7 5 4 9 9 Si 1.86799 * 120.00180 * 173.80325 * 7 5 4 10 10 H 1.48496 * 109.47239 * 275.00952 * 9 7 5 11 11 H 1.48494 * 109.47011 * 35.00925 * 9 7 5 12 12 H 1.48501 * 109.47048 * 155.00523 * 9 7 5 13 13 C 1.35248 * 119.01902 * 343.88144 * 4 3 2 14 14 O 1.21304 * 120.77740 * 179.41392 * 13 4 3 15 15 C 1.51110 * 118.44243 * 359.24430 * 13 4 3 16 16 H 1.09005 * 109.66263 * 149.35039 * 15 13 4 17 17 C 1.53000 * 109.81157 * 269.85735 * 15 13 4 18 18 C 1.52998 * 109.47002 * 179.11641 * 17 15 13 19 19 C 1.52998 * 109.46798 * 299.10998 * 17 15 13 20 20 O 1.35117 * 119.59858 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.46867 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47533 * 119.99568 * 1 2 3 23 23 H 1.09004 * 109.46887 * 240.00099 * 1 2 3 24 24 H 0.97004 * 120.00497 * 179.97438 * 8 7 5 25 25 H 1.08994 * 109.47398 * 59.11052 * 17 15 13 26 26 H 1.09004 * 109.47617 * 59.99701 * 18 17 15 27 27 H 1.09004 * 109.46946 * 180.02562 * 18 17 15 28 28 H 1.09001 * 109.46895 * 299.99472 * 18 17 15 29 29 H 1.09001 * 109.47150 * 179.97438 * 19 17 15 30 30 H 1.09000 * 109.48038 * 300.00026 * 19 17 15 31 31 H 1.09008 * 109.47061 * 60.00621 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1463 1.1254 0.0000 4 7 3.5484 1.1429 0.0020 5 6 4.2291 2.2823 -0.3308 6 1 5.3042 2.2592 -0.4314 7 6 3.5378 3.4680 -0.5391 8 7 2.2232 3.4715 -0.5371 9 14 4.4756 5.0585 -0.8224 10 1 4.8327 5.6625 0.4863 11 1 5.7142 4.7729 -1.5901 12 1 3.6254 6.0046 -1.5888 13 6 4.2181 0.0152 0.3323 14 8 5.4309 -0.0085 0.3342 15 6 3.4201 -1.2134 0.7027 16 1 3.9729 -2.1091 0.4190 17 6 3.1588 -1.2271 2.2101 18 6 2.3320 -2.4621 2.5732 19 6 4.4926 -1.2684 2.9585 20 8 2.1744 -1.1749 -0.0005 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5137 -0.8900 23 1 -0.3633 -0.5138 0.8900 24 1 1.7401 4.3001 -0.6823 25 1 2.6116 -0.3277 2.4922 26 1 2.8793 -3.3616 2.2911 27 1 2.1454 -2.4716 3.6471 28 1 1.3817 -2.4328 2.0400 29 1 4.3066 -1.2776 4.0325 30 1 5.0400 -2.1678 2.6765 31 1 5.0818 -0.3884 2.6999 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259818239.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:07 Heat of formation + Delta-G solvation = -44.065417 kcal Electronic energy + Delta-G solvation = -16526.311741 eV Core-core repulsion = 13808.884188 eV Total energy + Delta-G solvation = -2717.427554 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.08681 -39.06612 -37.44476 -35.83718 -34.34483 -33.08704 -29.76371 -28.57139 -28.00058 -26.40110 -23.29919 -22.20433 -20.62286 -19.70382 -18.07030 -17.45161 -17.04871 -16.80536 -15.82511 -15.67065 -15.30068 -14.82737 -14.15694 -14.03234 -13.66243 -13.55932 -13.18969 -13.11399 -13.05958 -12.99548 -12.53128 -12.46228 -12.36797 -12.13908 -12.00049 -11.83543 -11.29899 -10.77178 -10.18436 -9.43098 -8.23486 -6.03835 0.80879 1.35597 1.38307 1.49028 1.82509 1.97595 2.28986 2.57453 3.00883 3.18962 3.60478 3.72570 4.06470 4.19509 4.47478 4.58779 4.70957 4.74594 4.81118 4.85581 4.97684 5.05638 5.08782 5.26710 5.28343 5.39015 5.51132 5.61239 6.05572 6.61034 6.96658 7.51784 7.91061 8.70866 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.031396 B = 0.010756 C = 0.008809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.616743 B = 2602.472189 C = 3177.662337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.206 3.794 3 N -0.246 5.246 4 N -0.293 5.293 5 C -0.371 4.371 6 H 0.091 0.909 7 C 0.009 3.991 8 N -0.830 5.830 9 Si 0.994 3.006 10 H -0.268 1.268 11 H -0.271 1.271 12 H -0.263 1.263 13 C 0.370 3.630 14 O -0.605 6.605 15 C 0.099 3.901 16 H 0.146 0.854 17 C -0.108 4.108 18 C -0.128 4.128 19 C -0.139 4.139 20 O -0.348 6.348 21 H 0.089 0.911 22 H 0.105 0.895 23 H 0.110 0.890 24 H 0.270 0.730 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.349 -8.051 4.766 11.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.021 4.021 3 N -0.072 5.072 4 N -0.098 5.098 5 C -0.497 4.497 6 H 0.109 0.891 7 C -0.200 4.200 8 N -0.462 5.462 9 Si 0.816 3.184 10 H -0.194 1.194 11 H -0.196 1.196 12 H -0.187 1.187 13 C 0.159 3.841 14 O -0.490 6.490 15 C 0.039 3.961 16 H 0.163 0.837 17 C -0.128 4.128 18 C -0.185 4.185 19 C -0.196 4.196 20 O -0.255 6.255 21 H 0.107 0.893 22 H 0.123 0.877 23 H 0.128 0.872 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.005 -7.261 4.632 10.499 hybrid contribution 1.157 0.418 -0.289 1.264 sum -4.848 -6.843 4.343 9.444 Atomic orbital electron populations 1.20580 0.80492 1.05163 1.05574 1.26895 0.97978 0.79783 0.97412 1.76224 0.91123 1.21951 1.17931 1.44820 1.00692 1.10238 1.54096 1.19618 0.92107 0.86171 1.51822 0.89120 1.26234 0.96696 1.01784 0.95256 1.70344 1.06607 1.27859 1.41410 0.84983 0.78041 0.76611 0.78777 1.19363 1.19582 1.18716 1.22008 0.89274 0.86754 0.86017 1.90481 1.14728 1.84482 1.59346 1.23005 0.81952 0.96681 0.94447 0.83659 1.21585 0.98888 1.01139 0.91207 1.21696 0.99527 0.94801 1.02459 1.21730 0.95257 1.01826 1.00819 1.85949 1.33860 1.34493 1.71184 0.89265 0.87678 0.87166 0.92029 0.93375 0.90907 0.90343 0.91559 0.89769 0.90848 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.41 71.24 0.74 -0.92 16 2 C 0.21 8.52 7.13 88.46 0.63 9.15 16 3 N -0.25 -12.90 8.77 -165.46 -1.45 -14.35 16 4 N -0.29 -17.14 3.61 -306.24 -1.11 -18.24 16 5 C -0.37 -22.81 9.65 84.05 0.81 -22.00 16 6 H 0.09 5.80 7.26 -2.91 -0.02 5.77 16 7 C 0.01 0.48 5.48 84.89 0.47 0.94 16 8 N -0.83 -46.59 11.37 21.64 0.25 -46.34 16 9 Si 0.99 43.80 29.56 68.60 2.03 45.83 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 13 C 0.37 19.97 6.18 87.71 0.54 20.51 16 14 O -0.61 -35.88 15.93 -3.10 -0.05 -35.93 16 15 C 0.10 4.03 2.86 29.98 0.09 4.11 16 16 H 0.15 5.27 8.14 -2.38 -0.02 5.25 16 17 C -0.11 -3.63 2.48 -10.80 -0.03 -3.66 16 18 C -0.13 -2.96 9.05 71.98 0.65 -2.31 16 19 C -0.14 -4.51 8.87 71.98 0.64 -3.87 16 20 O -0.35 -13.72 9.49 -83.93 -0.80 -14.51 16 21 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 22 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 24 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 25 H 0.05 1.85 7.84 -2.39 -0.02 1.83 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.50 7.69 -2.39 -0.02 1.48 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.02 0.98 6.70 -2.38 -0.02 0.97 16 Total: -1.00 -75.21 265.04 4.53 -70.68 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.12 Total: 10.92 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 4.54 Total: 1.96 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.31 Total: -78.94 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.85 Total: -50.44 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -75.21 4.53 -70.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259818239.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.617 kcal (2) G-P(sol) polarization free energy of solvation -75.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds