Wall clock time and date at job start Mon Mar 30 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 C 1.53004 * 109.47510 * 239.99931 * 2 1 3 5 5 C 1.50698 * 109.47059 * 119.99719 * 2 1 3 6 6 N 1.29834 * 125.33640 * 239.99842 * 5 2 1 7 7 O 1.41847 * 107.55790 * 180.02562 * 6 5 2 8 8 N 1.41863 * 106.52738 * 359.75937 * 7 6 5 9 9 C 1.30362 * 107.37600 * 0.40503 * 8 7 6 10 10 O 1.35715 * 125.39528 * 179.85353 * 9 8 7 11 11 C 1.42893 * 117.00103 * 359.69588 * 10 9 8 12 12 C 1.50703 * 109.47555 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99239 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00038 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99624 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00330 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46612 * 90.00467 * 16 14 12 18 18 H 1.48490 * 109.47105 * 210.00117 * 16 14 12 19 19 H 1.48495 * 109.47173 * 330.00629 * 16 14 12 20 20 H 1.08998 * 109.47491 * 300.00135 * 1 2 3 21 21 H 1.09004 * 109.46746 * 60.00622 * 1 2 3 22 22 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47068 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47310 * 299.99335 * 3 2 1 25 25 H 1.08995 * 109.47548 * 60.00172 * 3 2 1 26 26 H 1.09002 * 109.46835 * 300.00052 * 4 2 1 27 27 H 1.09004 * 109.47111 * 59.99673 * 4 2 1 28 28 H 1.08995 * 109.47133 * 180.02562 * 4 2 1 29 29 H 1.08996 * 109.47255 * 299.99772 * 11 10 9 30 30 H 1.09004 * 109.47453 * 59.99455 * 11 10 9 31 31 H 0.96998 * 120.00102 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 2.7819 -0.1817 2.1493 7 8 3.0284 -1.1795 3.1269 8 7 2.3451 -2.3452 2.6950 9 6 1.7614 -2.0582 1.5652 10 8 1.0084 -2.9148 0.8296 11 6 0.8513 -4.2410 1.3378 12 6 -0.0096 -5.0417 0.3951 13 1 -0.3983 -4.5833 -0.5023 14 6 -0.3018 -6.3589 0.6786 15 7 -1.0536 -7.0575 -0.1439 16 14 0.3700 -7.1514 2.2310 17 1 -0.5947 -6.9571 3.3432 18 1 0.5707 -8.6042 1.9981 19 1 1.6677 -6.5229 2.5859 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 -1.7489 -1.2492 27 1 1.6767 -0.2075 -2.1393 28 1 3.1300 -0.7216 -1.2489 29 1 1.8293 -4.7139 1.4276 30 1 0.3760 -4.2007 2.3179 31 1 -1.2590 -7.9843 0.0553 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259829067.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:46 Heat of formation + Delta-G solvation = 39.082323 kcal Electronic energy + Delta-G solvation = -15841.888742 eV Core-core repulsion = 13128.066745 eV Total energy + Delta-G solvation = -2713.821997 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.32434 -38.04510 -37.07123 -33.04133 -31.89513 -31.49926 -28.75277 -27.39081 -27.25915 -24.10892 -22.66190 -21.31700 -19.42081 -17.84292 -16.69295 -16.24666 -16.00986 -15.16520 -14.60285 -14.43323 -13.97933 -13.96621 -13.18585 -12.68320 -12.37530 -12.36014 -12.11998 -11.81195 -11.71682 -11.59161 -11.26078 -11.25564 -11.05504 -10.78754 -10.73647 -10.41462 -10.11418 -9.59789 -9.27233 -8.82231 -6.36291 -4.41036 0.84493 2.38845 2.69746 3.13508 3.20573 3.25252 3.28640 3.62607 4.16432 4.45398 4.77530 4.84044 4.94625 4.95317 5.31556 5.52569 5.62459 5.64870 5.75986 5.83315 5.90923 5.95070 6.10159 6.21152 6.32532 6.38170 6.53882 7.00071 7.27663 7.52361 8.22634 8.68183 9.17948 10.74950 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.034798 B = 0.007969 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.459635 B = 3512.904615 C = 4120.994018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.002 3.998 3 C -0.139 4.139 4 C -0.146 4.146 5 C 0.102 3.898 6 N -0.274 5.274 7 O 0.021 5.979 8 N -0.344 5.344 9 C 0.271 3.729 10 O -0.262 6.262 11 C 0.167 3.833 12 C -0.536 4.536 13 H 0.090 0.910 14 C 0.084 3.916 15 N -0.882 5.882 16 Si 0.869 3.131 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.261 1.261 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 13.053 -0.584 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.001 3.999 3 C -0.197 4.197 4 C -0.204 4.204 5 C -0.083 4.083 6 N -0.018 5.018 7 O -0.115 6.115 8 N -0.118 5.118 9 C 0.052 3.948 10 O -0.163 6.163 11 C 0.094 3.906 12 C -0.574 4.574 13 H 0.108 0.892 14 C -0.120 4.120 15 N -0.518 5.518 16 Si 0.694 3.306 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.186 1.186 20 H 0.075 0.925 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.792 12.980 0.279 13.839 hybrid contribution -0.066 -0.897 0.441 1.002 sum 4.725 12.082 0.720 12.994 Atomic orbital electron populations 1.21944 0.91626 1.04371 1.02416 1.19366 0.96997 0.94918 0.88655 1.21861 1.01636 0.93602 1.02561 1.21945 1.01138 1.02164 0.95111 1.24230 0.95428 0.90728 0.97927 1.79749 1.12032 1.11575 0.98492 1.93308 1.65118 1.13824 1.39223 1.80471 1.14385 1.04503 1.12411 1.23156 0.91386 0.90948 0.89341 1.86400 1.61108 1.24732 1.44073 1.21256 0.98154 0.74707 0.96455 1.20652 1.31829 0.95721 1.09155 0.89167 1.24627 0.94302 0.96259 0.96834 1.69831 1.35853 1.09736 1.36412 0.86938 0.80550 0.79545 0.83527 1.19432 1.20203 1.18582 0.92460 0.90895 0.90188 0.92009 0.91338 0.92014 0.90186 0.90895 0.92455 0.95353 0.95823 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.36 37.16 0.31 -1.46 16 2 C 0.00 0.03 0.91 -155.66 -0.14 -0.11 16 3 C -0.14 -1.45 7.92 37.16 0.29 -1.15 16 4 C -0.15 -1.77 8.36 37.16 0.31 -1.46 16 5 C 0.10 1.67 5.64 -82.20 -0.46 1.21 16 6 N -0.27 -4.65 12.21 33.85 0.41 -4.24 16 7 O 0.02 0.41 13.70 12.04 0.17 0.57 16 8 N -0.34 -7.14 12.34 30.64 0.38 -6.76 16 9 C 0.27 5.29 7.45 -16.93 -0.13 5.17 16 10 O -0.26 -5.63 8.19 -18.85 -0.15 -5.78 16 11 C 0.17 4.05 4.41 36.01 0.16 4.20 16 12 C -0.54 -14.73 9.99 -34.44 -0.34 -15.07 16 13 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 14 C 0.08 2.33 5.47 -17.82 -0.10 2.24 16 15 N -0.88 -25.59 13.96 55.43 0.77 -24.82 16 16 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.08 1.16 7.08 -51.93 -0.37 0.80 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.16 7.08 -51.93 -0.37 0.80 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 30 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 269.42 15.07 4.06 4.06 Total: -1.00 -28.94 269.42 -3.18 -32.13 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -4.05 Total: -4.59 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.10 Total: -6.45 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 1.56 Total: -35.82 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: 0.01 Total: -5.21 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.94 -3.18 -32.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829067.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.210 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds